Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0515
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842...    68   5e-12
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467...    54   7e-08
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    53   2e-07
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608...    30   1.2  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    29   2.8  

>03_06_0129 -
           31883732-31883854,31883989-31884051,31884213-31884272,
           31884724-31884784,31884934-31885004,31885313-31885389,
           31885856-31885913,31885995-31886048,31886279-31886297,
           31886359-31886466,31886574-31886690,31886836-31886919,
           31887079-31887171,31887279-31887499,31888294-31888371,
           31889237-31889499,31890109-31890247
          Length = 562

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
 Frame = +3

Query: 393 RYTAAPNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPRE 569
           R  +   EIF NRSL++ N+   GFDMDYTLA+YK   +E L ++ T E+LV   GYP E
Sbjct: 75  RTISVGKEIFCNRSLNMRNITAVGFDMDYTLAQYKPETFEALAYHGTIEKLVKDLGYPEE 134

Query: 570 ILEFEYD 590
           +L +++D
Sbjct: 135 LLTWQFD 141


>09_04_0174 +
           15346123-15346207,15346350-15346502,15346623-15346759,
           15346856-15347005,15347405-15347506,15347832-15347996,
           15348402-15348499,15348704-15348827,15349056-15349145,
           15349555-15349599,15350438-15350833
          Length = 514

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
 Frame = +3

Query: 408 PNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFE 584
           P  I+VN+++ L++++ YGFD DYTL+ Y S   + L ++L K+ LV +  YP   L++E
Sbjct: 78  PQGIYVNKNVKLDDLQVYGFDYDYTLSHY-SEHLQCLIYDLAKKHLVNELKYPESCLKYE 136

Query: 585 YD 590
           YD
Sbjct: 137 YD 138


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/59 (42%), Positives = 40/59 (67%)
 Frame = +3

Query: 414 EIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYD 590
           +IF +R++++E++K  GF M+YTL  YK   +E L +   K+RLV   YP +ILE+ Y+
Sbjct: 381 QIFCSRTVNMEDIKAIGFKMEYTLINYK-VTFENLAYVEAKKRLVNGKYPEKILEWNYN 438


>04_03_0459 +
           16159015-16159771,16160251-16160365,16160478-16160844,
           16160930-16161244,16161324-16161644,16161730-16161882
          Length = 675

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 405 PLCICRLCGKLIHSRLHNLRNAHWSRFPSYD 313
           PLC+C    +L+ SR  ++R  H+ R P+YD
Sbjct: 486 PLCLCGDRCQLMASRNPDIRGRHFFRCPNYD 516


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 429 RSLHLENVKFYGFDMDYTLAEYKSPQYETLG 521
           R LHLE+V+F G   DYTL +   P  E LG
Sbjct: 300 RELHLEHVRFNG---DYTLDDAMLPLLEYLG 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,160
Number of Sequences: 37544
Number of extensions: 304151
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)