Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0515
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)                  43   2e-04
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     34   0.10 
SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)               29   3.8  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)                    27   8.7  
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
          Length = 403

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 417 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDP 593
           IF N  L L+ +  YGFD DYTLA Y +  +  +        L   GYP+ +   +Y+P
Sbjct: 67  IFANNELSLKYINVYGFDYDYTLASYSNTLHFLIYDLAVGNLLSFFGYPKGVEGMKYNP 125


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 408 PNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLV-VKGYPREILE 578
           P +  V R+LH+   +F  +D D    +Y    Y T  F +T+   V VKG PRE+LE
Sbjct: 399 PRDFMVGRTLHIMGRRFLLYDCD----QYTKDFYRT-NFGVTEFPAVDVKGAPRELLE 451


>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
          Length = 689

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 399 TAAPNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQ 506
           T   N   V R +H  N+ F+ F+    + EY+SP+
Sbjct: 93  TLPSNTPLVTRLIHYHNLMFWAFERLRVVREYRSPR 128


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 390  DRYTAAPNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPRE 569
            D Y      +F  R +H   + F+G  + +T  + KS Q  +L   ++K  +    +PR 
Sbjct: 1529 DWYGENRKPVFEKRGMHPFGMAFFGDKLYWTDYKTKSVQELSLSSGVSKPFVRRLSFPRG 1588

Query: 570  ILEFEYDPS 596
            +  + YDPS
Sbjct: 1589 L--YVYDPS 1595


>SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)
          Length = 955

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 309 KDHKMENGTSVHFEDYVNGNGSAYHKGDRYTAAPN 413
           KD+K E GT VH  D V    S +   D    AP+
Sbjct: 208 KDYKKEQGTYVHILDPVPATISHFTTDDEIVLAPD 242


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 315  HKMENGTSVHFEDYVNGNGSAYHKGDRYTAAPNEIFVNRS 434
            H++  G       Y    G    +G+  T+ PN +F N +
Sbjct: 1024 HRLSTGNLDDASPYAEFTGKQLREGEHLTSTPNALFTNHN 1063


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,421
Number of Sequences: 59808
Number of extensions: 384736
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)