Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0515
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    84   8e-17
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    83   1e-16
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    57   8e-09
U51995-2|AAA96071.1|  291|Caenorhabditis elegans F-box a protein...    28   4.4  
AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 36/63 (57%), Positives = 44/63 (69%)
 Frame = +3

Query: 405 APNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFE 584
           A   +FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI  F+
Sbjct: 9   ADERVFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFK 68

Query: 585 YDP 593
           YDP
Sbjct: 69  YDP 71


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +3

Query: 396 YTAAPNE-IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREI 572
           Y   P E +FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI
Sbjct: 8   YKRNPAERVFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEI 67

Query: 573 LEFEYDP 593
             F+YDP
Sbjct: 68  KSFKYDP 74


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +3

Query: 471 MDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDP 593
           MDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP
Sbjct: 1   MDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDP 41


>U51995-2|AAA96071.1|  291|Caenorhabditis elegans F-box a protein
           protein 52 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = +3

Query: 303 DMKDHKMENGTSVHFEDYVNGNGSAYHKGDRYTAAPNEIFVNRSL--------HLENVKF 458
           D K + M +G  + +    NG+ +A H G +Y     + FV+R+L        H +N+KF
Sbjct: 44  DCKLNLMLDGIEILYTKTANGSSNANHNGQKY-IIDRKNFVDRALKDLKIVSKHAQNIKF 102


>AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical
           protein H16D19.3 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 405 PLCICRLCGKLIHSRLHNLRNAHWSRFPSYDPSCHHINKTN 283
           P+ IC  C +   SR   + + H       DP C +I +TN
Sbjct: 143 PVYICNCCNRTWSSRSEYVAHLHGRDHMCPDPVCKYIFETN 183


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 405 PLCICRLCGKLIHSRLHNLRNAHWSRFPSYDPSCHHINKTN 283
           P+ IC  C +   SR   + + H       DP C +I +TN
Sbjct: 155 PVYICNCCNRTWSSRNEYVAHLHGRDHMCPDPVCKYIFETN 195


>Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical
           protein K10D11.3 protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 336 WSRFPSYDPSCHHINKTN 283
           WS FP+ +P  +H+NKT+
Sbjct: 340 WSPFPTPNPVFYHVNKTS 357


>Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical
           protein ZC506.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 509 VLWRFVFGQCIVHIKTVKFNIF 444
           V WR VFG  +V++  ++F +F
Sbjct: 152 VFWRIVFGVSVVYLMLLQFTLF 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,483
Number of Sequences: 27780
Number of extensions: 297934
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)