Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0515
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75210.1 68414.m08737 5' nucleotidase family protein contains...    71   4e-13
At2g23890.1 68415.m02853 5' nucleotidase family protein contains...    62   4e-10
At5g48960.1 68418.m06057 5' nucleotidase family protein low simi...    46   1e-05
At5g26020.1 68418.m03096 hypothetical protein                          30   1.0  
At5g37210.1 68418.m04468 DC1 domain-containing protein contains ...    29   2.4  
At5g39820.1 68418.m04823 no apical meristem (NAM) family protein...    27   7.2  
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    27   9.5  
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    27   9.5  

>At1g75210.1 68414.m08737 5' nucleotidase family protein contains
           Pfam profile: PF05761 5' nucleotidase family
          Length = 642

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = +3

Query: 384 KGDRYTAAPNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GY 560
           +G +     N+IF NRSL+++N+   GFDMDYTLA+YKS  +E+L ++ T  +LV   GY
Sbjct: 138 EGGKKIDISNQIFCNRSLNMKNIIAVGFDMDYTLAQYKSETFESLAYDGTVRKLVYDLGY 197

Query: 561 PREILEFEYD 590
           P E+LE+ +D
Sbjct: 198 PNELLEWTFD 207


>At2g23890.1 68415.m02853 5' nucleotidase family protein contains
           Pfam PF05761: 5' nucleotidase family; similar to
           Cytosolic purine 5'-nucleotidase (EC 3.1.3.5)
           (5'-nucleotidase cytosolic II) (Swiss-Prot:P49902) [Homo
           sapiens]
          Length = 553

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
 Frame = +3

Query: 408 PNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFE 584
           P  I+VN++L L+N++ YGFD DYTLA Y S   ++L ++L K+ +V +  YP    +FE
Sbjct: 96  PQGIYVNKNLRLDNIQVYGFDYDYTLAHYSS-HLQSLIYDLAKKHMVNEFRYPDVCTQFE 154

Query: 585 YDPS 596
           YDP+
Sbjct: 155 YDPT 158


>At5g48960.1 68418.m06057 5' nucleotidase family protein low
           similarity to SP|P49902 Cytosolic purine 5'-nucleotidase
           (EC 3.1.3.5) (5'-nucleotidase cytosolic II) {Homo
           sapiens}; contains Pfam profile PF05761: 5' nucleotidase
           family
          Length = 642

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +3

Query: 405 APNEIFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFE 584
           +P  IF +R+L+L ++   G+DMDYTL  Y    +E   ++   E L   G+P + L F+
Sbjct: 161 SPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGKAYDYCMENLKSMGFPVDGLAFD 220


>At5g26020.1 68418.m03096 hypothetical protein
          Length = 241

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 300 DDMKDHKMENGTSVHFEDYVNGNGSAYHKGDRYTAAPNEIFVNRSLHLENVKFYGFDMDY 479
           DD +D   +NG     +D  NG  S  +K  +Y+   N + +N    LE  KF     D 
Sbjct: 169 DDEEDDYGDNGADDVDDDEDNGKSSKPNKRRQYSKVWNGLSINMQSQLEYEKFDA--EDE 226

Query: 480 TLAEYKS 500
           TL  ++S
Sbjct: 227 TLPSFQS 233


>At5g37210.1 68418.m04468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 625

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -2

Query: 444 LNATIC*RKFR*APLCICRLCGKLIHSRLHNL-RNAHWSRFP---SYDPSCHHIN 292
           L   +C   +  +P  IC  CG ++H R  +L R    SR P   S+ PS H  N
Sbjct: 248 LTCDVCALAYSTSPFYICPPCGFVVHGRCIDLPRVIRISRHPHRISFTPSFHQGN 302


>At5g39820.1 68418.m04823 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           NAC domain protein NAM, Arabidopsis thaliana,
           gb:AAD17313
          Length = 334

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 363 RLHNLRNAHWSRFPSYDPSCHHINKTN 283
           RL +L ++H S +P+Y+    H+N  N
Sbjct: 143 RLPSLSDSHHSSYPNYNNKKQHLNNNN 169


>At5g35210.2 68418.m04175 peptidase M50 family protein /
            sterol-regulatory element binding protein (SREBP) site 2
            protease family protein contains PFam PF02163:
            sterol-regulatory element binding protein (SREBP) site 2
            protease
          Length = 1409

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 408  APLCICRLCGKLIHSRLHNLRNAHWSRFPSYDPSC 304
            AP  +C +CG LIHS       + WS  P    SC
Sbjct: 1373 APDLLCTVCGLLIHSHC-----SPWSALPGSSWSC 1402


>At5g35210.1 68418.m04174 peptidase M50 family protein /
            sterol-regulatory element binding protein (SREBP) site 2
            protease family protein contains PFam PF02163:
            sterol-regulatory element binding protein (SREBP) site 2
            protease
          Length = 1576

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 408  APLCICRLCGKLIHSRLHNLRNAHWSRFPSYDPSC 304
            AP  +C +CG LIHS       + WS  P    SC
Sbjct: 1373 APDLLCTVCGLLIHSHC-----SPWSALPGSSWSC 1402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,658,802
Number of Sequences: 28952
Number of extensions: 264079
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)