Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0514
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    39   4e-04
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    27   1.6  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    26   2.8  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    25   4.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   6.5  

>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 352 WVIERVVSAALVP--LIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDY 498
           W  ER+++ A+VP  +IPL     + L D+ LA  +  H+  G E+  +DY
Sbjct: 88  WDFERIIAIAMVPQVMIPLFTGTSHPLMDAALACTLITHAHLGFESCVIDY 138


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 99  YHTINNHGVLHVSSYIRMPKSNVHSTSYEASDPAS 203
           Y+T+ N GV ++  Y+ +P   V +T      PA+
Sbjct: 65  YYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAA 99


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 274 ILNAIRSFRTSCVRRSAEKVEDHSRL 351
           +LNA  S RT+C RR  + +E H+ +
Sbjct: 5   VLNAQVSIRTACCRRWIDCIECHNEI 30


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 99  YHTINNHGVLHVSSYIRMPKSNVHST 176
           Y+T+ N GV ++  Y+ +P   V +T
Sbjct: 65  YYTLTNEGVEYLREYLHLPAEVVPAT 90


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 78  YKKVLVIYHTINNHGVLHVSSYIRMPKSNVHSTSYEASDPA 200
           YK +  +YH I N  +L  +  +R  +S +        DPA
Sbjct: 200 YKLIYQLYHDITNLDILITNELLRAIESLLRRPMLYCHDPA 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,541
Number of Sequences: 5004
Number of extensions: 42639
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)