Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0514
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   3.7  
06_03_0639 + 23055223-23055678,23055788-23056627                       27   8.7  
02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814     27   8.7  
02_03_0095 + 15144538-15145596                                         27   8.7  
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454     27   8.7  

>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 390 WDQCSRNHSLNDPEPGVVLDLLR*PAHARR 301
           W + S NH   D   G+VL LL  P+HAR+
Sbjct: 338 WIEQSENHRKGD-HAGIVLVLLNHPSHARQ 366


>06_03_0639 + 23055223-23055678,23055788-23056627
          Length = 431

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 358 IERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAIA 489
           IER ++AALV   P+A  +  +     L +  T    W +EA A
Sbjct: 66  IERALAAALVSYYPIAGRLAERGDGGELVVDCTGEGVWFIEATA 109


>02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814
          Length = 472

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 396 SVSPHDAEQTIRLSPGDTDHRSQFLGPGSDRGRLRAR 506
           S S  +A++  R  P D   +    GPGSD+G+   R
Sbjct: 80  SASGSNAKRRSRREPNDLIKKPPLPGPGSDQGKASMR 116


>02_03_0095 + 15144538-15145596
          Length = 352

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 367 VVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAI 486
           +VS A++PLI       N +    L IL T H ++ L+ +
Sbjct: 134 LVSGAVIPLIIYTYQFKNAMSRYQLLILYTGHIYFSLQLL 173


>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
          Length = 249

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 352 RAWSGPRPSPLTGARK 305
           R W+GP  SPL GA K
Sbjct: 44  RTWAGPEASPLRGAAK 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,853,271
Number of Sequences: 37544
Number of extensions: 277579
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)