Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0514
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)                  30   1.3  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   1.7  
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)                   28   5.1  
SB_8489| Best HMM Match : Kelch_1 (HMM E-Value=1.2e-30)                27   8.9  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_38762| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0043)        27   8.9  

>SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 39  VLLDFKVIFIFYYYKKVLVIYHTINNHGVLHVSSYIRMPKSNVHSTSYEA 188
           + L FK+  +   Y  ++++   +N HG LH+S   ++  SN+H  S +A
Sbjct: 129 IKLCFKISLVILPYGIIVLL--PLNLHGGLHLSGLDKLTMSNMHEKSTKA 176


>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
          Length = 831

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 504 AHVVDRDRFQAPETVSGDQY 445
           A V+DRD F+A E V GDQY
Sbjct: 714 AKVLDRDGFEALECVKGDQY 733


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 228  AGDHTLCYCWLGR*PHSLLSEHSTLAS*CTKKHGERHGY 112
            + D   CY W GR P   + +H    +   K HGERHGY
Sbjct: 1573 SNDGRQCYPW-GRSP---VGQHPRRCASRDKTHGERHGY 1607


>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
          Length = 506

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 505 RARSRPRSLPGPRNCER*SVSPGESRIVCSAS*GLTE 395
           +ARSRP+S P      + S SPG S    S    LTE
Sbjct: 178 KARSRPKSTPQQSQTLQCSPSPGPSACTLSVDRQLTE 214


>SB_8489| Best HMM Match : Kelch_1 (HMM E-Value=1.2e-30)
          Length = 619

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 93  VIYHTINNHGVLHVSSYIRMPKSNVHSTSYEASDPASNNTTYDLQLIAC*KY 248
           V+ H ++  GV  V SY    K  +++ ++EA    +N       L AC  Y
Sbjct: 118 VVLHDLDPKGVNAVISYFYNSKIEINADNFEAVFAVANMWDVKFVLTACENY 169


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 499 RSRPRSLPGPRNCER 455
           R  P+SLPGP N ER
Sbjct: 520 RDEPKSLPGPENLER 534


>SB_38762| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0043)
          Length = 410

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 402 SPHDAEQTIRLSPGDTD 452
           SPHD E T   SPGD+D
Sbjct: 322 SPHDPEITSACSPGDSD 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,973
Number of Sequences: 59808
Number of extensions: 329831
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)