Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0514
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical pr...    55   3e-08
Z78015-2|CAB01431.1|   97|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    27   5.9  
U55375-2|AAC69044.2|  285|Caenorhabditis elegans Uncoordinated p...    27   7.8  
EF538426-1|ABQ08183.1|  289|Caenorhabditis elegans stomatin-like...    27   7.8  

>Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical
           protein F33A8.5 protein.
          Length = 145

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 21/68 (30%), Positives = 39/68 (57%)
 Frame = +1

Query: 301 TSCVRRSAEKVEDHSRLWVIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLE 480
           TS +   A KV DHS  + +ER+ +  ++P++P +  +   + D++L + +T H  WG+ 
Sbjct: 31  TSTLNDGASKVPDHSMHFKLERLWAVGMLPILPASYFIHGPVMDAVLTVALTLHIHWGIH 90

Query: 481 AIAVDYVR 504
            +  DY R
Sbjct: 91  GVVYDYAR 98


>Z78015-2|CAB01431.1|   97|Caenorhabditis elegans Hypothetical
           protein R02D5.4 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 169 TQQAMRLATQPAITQRMISSSLPVRNIMKDTKTTPILNAIRSFRTSCVRRSAEKVEDHSR 348
           T  +M L T  A T R+  +       M+ ++ TPIL   RS   SC++   E  E+  R
Sbjct: 40  THNSMELPTSSATTARIEGAR------MESSRQTPILLLNRSMSDSCLKLQIEDEEEEGR 93


>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 227 LEIIRCVIAGWVASLIAC 174
           L  + CV++G+VASL+AC
Sbjct: 95  LTCLHCVLSGFVASLLAC 112


>U55375-2|AAC69044.2|  285|Caenorhabditis elegans Uncoordinated
           protein 1 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 193 TQPAITQRMISSSLPVRNIMKDTKTTPILNAIRSFRTSCVRRSAEKVED 339
           T   I  R++S ++P + I+     T  ++A+  FRTS    S   V+D
Sbjct: 91  TYRKIDLRVVSYAVPPQEILSKDSVTVSVDAVVYFRTSDPIASVNNVDD 139


>EF538426-1|ABQ08183.1|  289|Caenorhabditis elegans stomatin-like
           protein UNC-1 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 193 TQPAITQRMISSSLPVRNIMKDTKTTPILNAIRSFRTSCVRRSAEKVED 339
           T   I  R++S ++P + I+     T  ++A+  FRTS    S   V+D
Sbjct: 95  TYRKIDLRVVSYAVPPQEILSKDSVTVSVDAVVYFRTSDPIASVNNVDD 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,624,295
Number of Sequences: 27780
Number of extensions: 241392
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)