Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0514
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37790.1 68418.m04551 protein kinase family protein contains ...    28   3.1  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    28   3.1  
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi...    27   5.5  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    27   7.3  
At2g46960.2 68415.m05866 cytochrome P450 family protein similar ...    27   7.3  
At2g46960.1 68415.m05865 cytochrome P450 family protein similar ...    27   7.3  
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    27   9.6  
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc...    27   9.6  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    27   9.6  
At1g29090.1 68414.m03561 peptidase C1A papain family protein con...    27   9.6  

>At5g37790.1 68418.m04551 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 552

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 413 IMRANGINGTSAAETTLSMTQSLEWSSTFSADRRTQDVRNERIAFNMGVVLVSFIIFLTG 234
           ++  N  NG    ETT + T  L W+   S ++    V N  + F+ G ++ +   F  G
Sbjct: 157 VLMVNLENGVK--ETTGNATDDLRWTRARSLEKSISPVANTLVRFSYGEIVAATRNFSKG 214

Query: 233 NEL 225
             L
Sbjct: 215 RVL 217


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 63  FIFYYYKKVLVIYHTINNHGVLHVS---SYIRMPKSNVHSTSYEASDPAS 203
           F F+++  + ++   +N+ GVL +S   S +  P S + S +Y+  +P S
Sbjct: 16  FFFFFFSSLFLLSSALNSDGVLLLSFKYSVLLDPLSLLQSWNYDHDNPCS 65


>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 699

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 304 SCVRRSAEKVEDH-SRLWVIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFW 471
           SCV    +K      R W ++R++   ++ + PL ++   +L  SLL + + A S +
Sbjct: 69  SCVYLHIQKKPTQPQREWKLKRIMGRVIMVMNPLGIVTATELTFSLLFVALLAWSLY 125


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
            similar to DNA helicase HEL308 [Homo sapiens]
            GI:19110782; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 393  DSVSPHDAEQTIRLSPG 443
            DSVSPHD +QT RL  G
Sbjct: 1335 DSVSPHDRDQTKRLIYG 1351


>At2g46960.2 68415.m05866 cytochrome P450 family protein similar to
           cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
           contains Pfam profile: PF00067: Cytochrome P450;
           supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
          Length = 519

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 346 RLWVIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLE 480
           R+W +ER +  ++  +I   L   +   D LL IL+ A++  G E
Sbjct: 263 RVWKLERKMDNSIKRIISSRLQSKSDYGDDLLGILLKAYNTEGKE 307


>At2g46960.1 68415.m05865 cytochrome P450 family protein similar to
           cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
           contains Pfam profile: PF00067: Cytochrome P450;
           supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
          Length = 403

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 346 RLWVIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLE 480
           R+W +ER +  ++  +I   L   +   D LL IL+ A++  G E
Sbjct: 147 RVWKLERKMDNSIKRIISSRLQSKSDYGDDLLGILLKAYNTEGKE 191


>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +3

Query: 78  YKKVLVIYHTINNHGVLHVSSYIRMPKSNVHSTSYEASDPASNNTTYDLQLIAC*KYN-- 251
           +KKV  ++     HGV+ V SY  +  +   +  Y     A  N  +D   ++   YN  
Sbjct: 715 FKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTL 774

Query: 252 -EGY*NDTHIECYSFIPYVLRAPVSG 326
            + Y  D  +E +  I   ++   SG
Sbjct: 775 LDAYGKDKQMEKFRSILKRMKKSTSG 800


>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 387

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 400 TESMGPVQQKPLSQ*PRAWSGPRPSPLTGAR 308
           + S  P +++P+SQ  ++  GP+ SP+ G R
Sbjct: 331 SRSQSPRKRQPISQDLKSRLGPQRSPIRGGR 361


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 400 TESMGPVQQKPLSQ*PRAWSGPRPSPLTGAR 308
           + S  P +++P+SQ  ++  GP+ SP+ G R
Sbjct: 514 SRSQSPRKRQPISQDLKSRLGPQRSPIRGGR 544


>At1g29090.1 68414.m03561 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 355

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 398 GINGTSAAETTLSMTQSLEWSSTFSADRRTQDVRNE 291
           G+NG  ++E    M  S  W+ +  A R T+D R E
Sbjct: 113 GVNGIPSSEFVDEMIPSWNWNVSDVAGRETKDWRYE 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,991,018
Number of Sequences: 28952
Number of extensions: 220104
Number of successful extensions: 515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)