Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0512
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81059-6|CAB02929.2|  172|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   4.9  
AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.    28   4.9  
AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical ...    28   6.4  
AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    27   8.5  
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    27   8.5  

>Z81059-6|CAB02929.2|  172|Caenorhabditis elegans Hypothetical
           protein F11F1.7 protein.
          Length = 172

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -3

Query: 575 CISNLAGVHYPETIAFINRNSKHRS*SSAVLPL------VFVPRIIRIGN 444
           C S+   ++ P+   +I  N  HR  S+A  P+      +F+P I+R+GN
Sbjct: 114 CASDFGPINTPDPYLYIQHNCPHRD-SNATNPIQIDVIPLFLPSIVRLGN 162


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 298 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 179
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical
           protein C14A4.2 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 516 VAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLATDRLV 629
           VAID+ N LW     K  D  Y PP  L   +   R++
Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDLTLVVHYRRMI 270


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 298 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 179
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 516 VAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLATDRLV 629
           VAID+ N LW     K  D  Y PP  L   +   R++
Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDLTLVVHYRRMI 270


>AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical
           protein VT23B5.1 protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 370 IRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTT 224
           + D L  +CC +  + T    T        D  S  GNT  +   CLT+
Sbjct: 455 VMDLLKKICCDNLQVNTSKNDT--IIDAILDNISESGNTRKTQIACLTS 501


>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 135 EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 284
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 135 EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 284
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,539
Number of Sequences: 27780
Number of extensions: 357778
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)