Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0512
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23390.1 68417.m03372 expressed protein contains Pfam profi... 29 2.0
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 29 2.0
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 29 2.0
At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.6
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 28 4.5
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i... 28 4.5
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 28 4.5
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 28 4.5
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d... 27 7.9
>At4g23390.1 68417.m03372 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 401
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 175 IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 288
IV+ + ++ + + W +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 442 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 329
+R SSS P+ +G PS+K +V NI P CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -1
Query: 514 LNTEVSPPQ---FCPWFSCQE*SG*A---TIRPSSSTVPNVTGRPSSKR 386
L ++PP CP SC+ S A T PS++T P V GRPS +R
Sbjct: 257 LYMHMTPPTTLTMCP--SCERVSSSAATVTAAPSTTTTPTVVGRPSPQR 303
>At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 365
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 586 GQYCVSPILPASIIQRRLHSSIATLNTEVSPPQFCPWFSCQE 461
G C S ++ S+ Q +L S++ + VS P+F PW ++
Sbjct: 43 GMNCASTVICDSVFQNQLLSNVKSETEPVSVPEF-PWIKVRK 83
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 322 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 200
T+ P + + + YD AS F T SSSA T +R F PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209
>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 302
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 492 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 340
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 492 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 340
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 492 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 340
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 185
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 433 SSSTVPNVTGRPSSKRGIVTNIRDFLP 353
+++T P T +P K+GI+ I+D LP
Sbjct: 151 ATTTGPATTDQPHEKKGILEKIKDKLP 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,518
Number of Sequences: 28952
Number of extensions: 324919
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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