Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0509
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.52 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.68 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   8.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 157 NNRWLHVSRYKGMVLIIFN 213
           NN W++++  +G  LII+N
Sbjct: 196 NNTWVYIADVEGYALIIYN 214


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 412 IKFSNKLPYLNKMY 453
           +KFSN  PYLN++Y
Sbjct: 75  LKFSNIAPYLNQIY 88


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 195 HSFIARHMKPSVVLHDLMLYQRN 127
           ++ + RH++     H  MLYQ N
Sbjct: 345 NALVLRHVQAEAEKHAAMLYQYN 367


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 209 STKNYLNRCELKESEESA*NRLKIGPLYISF 301
           STK   N+C+  ++E+      ++   Y+ F
Sbjct: 91  STKKLFNKCKSIQNEDPCEKAYQLVKCYVEF 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,623
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)