Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0509
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52860.1 68418.m06561 ABC transporter family protein                28   5.1  
At4g11610.1 68417.m01859 C2 domain-containing protein contains I...    28   6.8  
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    27   8.9  

>At5g52860.1 68418.m06561 ABC transporter family protein 
          Length = 589

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 530 REKRNALGRARKHRITKILLHFTRIWYILFK*GNLL 423
           REK++ + R RK RIT+I L   R W I+++   LL
Sbjct: 297 REKQSIV-RYRKSRITEISLLARRFWKIIYRTRQLL 331


>At4g11610.1 68417.m01859 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1011

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 478  IFVMRCFLARPNAFLFSLPMLIALRGYFS 564
            IFV+ CF+A    F+  + +++AL G+F+
Sbjct: 954  IFVILCFIAAIVFFITPIQIVVALAGFFT 982


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
           myosin heavy chain [Arabidopsis thaliana]
           gi|602328|emb|CAA84067.
          Length = 1242

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 457 IRVKCRRIFVMRCFLARPNAFLFSLPMLIALRGYFSFDSTCRXXXXXXXLTG 612
           IRVKC      R F+   N FL   P +  L+G +  +  C+       LTG
Sbjct: 657 IRVKCAGYPTNRTFIEFLNRFLILAPEI--LKGEYEAEVACKWILEKKGLTG 706


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,446,017
Number of Sequences: 28952
Number of extensions: 251220
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)