Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0508
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 204 1e-53
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 130 1e-31
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 89 6e-19
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 82 5e-17
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 78 1e-15
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 78 1e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 61 1e-10
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 60 2e-10
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 60 2e-10
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 60 3e-10
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 54 1e-08
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 53 3e-08
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 52 9e-08
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 41 2e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 38 0.001
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 29 0.53
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 27 2.2
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 27 2.2
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 2.8
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 26 5.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 8.7
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 204 bits (497), Expect = 1e-53
Identities = 101/148 (68%), Positives = 118/148 (79%), Gaps = 18/148 (12%)
Frame = +2
Query: 227 EHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQR 406
+ K L+ IRNIGISAHIDSGKTT TER+L+YTGRI +HEV+GKDNVGA MD MELER++
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREK 111
Query: 407 GITIQSAATYTIW------------------KEHNINIIDTPGHVDFTVEVERALRVLDG 532
GITIQSAAT+ W K +NINIIDTPGH+DFT+EVERALRVLDG
Sbjct: 112 GITIQSAATHCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDG 171
Query: 533 AILVLCSVGGVQSQTLTVNRQMKRYNVP 616
A+LVLC+V GVQSQT+TV+RQM+RYNVP
Sbjct: 172 AVLVLCAVSGVQSQTITVDRQMRRYNVP 199
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 130 bits (315), Expect = 1e-31
Identities = 64/133 (48%), Positives = 86/133 (64%)
Frame = +2
Query: 218 KYAEHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELE 397
+Y + + +IRN+GI AHID+GKTTLTE++L+Y G V D VMD + E
Sbjct: 18 RYQSNISINSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNV---DTGDTVMDYLPAE 74
Query: 398 RQRGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQT 577
RQRGITI SAA W+ IN+IDTPGH DFT EVER++ VLDGA+ ++ GV++QT
Sbjct: 75 RQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQT 134
Query: 578 LTVNRQMKRYNVP 616
V +Q + +P
Sbjct: 135 KVVWKQATKRGIP 147
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 88.6 bits (210), Expect = 6e-19
Identities = 48/120 (40%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
Frame = +2
Query: 236 PLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGIT 415
P +RN + AHID GK+TL++ IL TG I++ H + + +D +E+ER+RGIT
Sbjct: 54 PQNRVRNWAVIAHIDHGKSTLSDCILKLTGVINE-HNFRNQ-----FLDKLEVERRRGIT 107
Query: 416 IQSAATYTIWKEHN----INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 583
+++ I+ H +N+IDTPGHVDF EV +L +G IL++ + G+Q+QTL+
Sbjct: 108 VKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLS 167
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 82.2 bits (194), Expect = 5e-17
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Frame = +2
Query: 233 KPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGI 412
K ENIRN + AH+D GKTTL + +L G I ++ G +D E E RGI
Sbjct: 14 KNQENIRNFTLLAHVDHGKTTLADSLLASNGIISS--KLAGTVRF---LDFREDEITRGI 68
Query: 413 TIQSAATYTIWK------------EHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSV 556
T++S+A +K ++ IN+ID+PGHVDF+ EV A R+ DGA +++ +V
Sbjct: 69 TMKSSAISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAV 128
Query: 557 GGVQSQTLTVNRQ 595
GV SQT+TV RQ
Sbjct: 129 EGVCSQTITVLRQ 141
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 77.8 bits (183), Expect = 1e-15
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 16/137 (11%)
Frame = +2
Query: 233 KPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGI 412
KP N+RN+ + AH+D GK+TLT+ ++ G I K MD+ E++RG+
Sbjct: 15 KP-SNVRNMSVIAHVDHGKSTLTDSLVQKAGIISA-----AKAGDARFMDTRADEQERGV 68
Query: 413 TIQSAA-------TYTIWKEHN---------INIIDTPGHVDFTVEVERALRVLDGAILV 544
TI+S A T K+ +N+ID+PGHVDF+ EV ALRV DGA++V
Sbjct: 69 TIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 545 LCSVGGVQSQTLTVNRQ 595
+ ++ GV QT TV RQ
Sbjct: 129 VDTIEGVCVQTETVLRQ 145
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 77.8 bits (183), Expect = 1e-15
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 16/137 (11%)
Frame = +2
Query: 233 KPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGI 412
KP N+RN+ + AH+D GK+TLT+ ++ G I K MD+ E++RG+
Sbjct: 15 KP-SNVRNMSVIAHVDHGKSTLTDSLVQKAGIISA-----AKAGDARFMDTRADEQERGV 68
Query: 413 TIQSAA-------TYTIWKEHN---------INIIDTPGHVDFTVEVERALRVLDGAILV 544
TI+S A T K+ +N+ID+PGHVDF+ EV ALRV DGA++V
Sbjct: 69 TIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 545 LCSVGGVQSQTLTVNRQ 595
+ ++ GV QT TV RQ
Sbjct: 129 VDTIEGVCVQTETVLRQ 145
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 60.9 bits (141), Expect = 1e-10
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Frame = +2
Query: 182 FQIELQKYSSHVKYAEHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKD 361
F + + Y+ + KP NI IG H+D GKTTLT I T + + + D
Sbjct: 34 FTVPARTYADEKVFVRKKPHVNIGTIG---HVDHGKTTLTAAI---TKCLSDLGQASFMD 87
Query: 362 NVGAVMDSMELERQRGITIQSA-ATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAI 538
+ +D E+ RGITI SA Y H ++ D PGH D+ + +DGAI
Sbjct: 88 Y--SQIDKAPEEKARGITISSAHVEYETANRHYAHV-DCPGHADYIKNMITGAATMDGAI 144
Query: 539 LVLCSVGGVQSQT 577
+V+ + G QT
Sbjct: 145 IVVSATDGQMPQT 157
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 60.1 bits (139), Expect = 2e-10
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Frame = +2
Query: 254 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 403
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 404 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVL 547
RGITI A ++N+ +ID PGH DF + D AIL++
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 60.1 bits (139), Expect = 2e-10
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Frame = +2
Query: 254 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 403
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 404 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVL 547
RGITI A ++N+ +ID PGH DF + D AIL++
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 59.7 bits (138), Expect = 3e-10
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Frame = +2
Query: 254 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 403
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 404 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVL 547
RGITI A ++N+ +ID PGH DF + D A+L++
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLII 116
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 54.4 bits (125), Expect = 1e-08
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Frame = +2
Query: 242 ENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQ 421
+++R+ ++ H+ GK+ L + +++YT K D+ LER+R ++I+
Sbjct: 138 DDVRSFIVAGHLHHGKSALLDLLVYYT----HPDTKPPKRRSLRYTDTHYLERERVMSIK 193
Query: 422 S-----AATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTV 586
S A + K IDTPGHVDF EV + + DG +LV+ + GV T +
Sbjct: 194 STPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRI 253
Query: 587 NRQMKRYNVP 616
+ +++P
Sbjct: 254 IKHAILHDMP 263
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.2 bits (122), Expect = 3e-08
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Frame = +2
Query: 254 NIGISAHIDSGKTTLTERILFYTGRIDQ--MHEVK------GKDN--VGAVMDSMELERQ 403
NI H+D+GK+TL ILF TG +D+ M +++ GK++ + +DS ER+
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Query: 404 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 562
+G T++ Y + +++D PGH + + D +LV+ + G
Sbjct: 300 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 352
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 51.6 bits (118), Expect = 9e-08
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Frame = +2
Query: 263 ISAHIDSGKTTLTERILFYTGRID-----QMHEV-----KGKDNVGAVMDSMELERQRGI 412
++ H+DSGK+T+ RI+F G I+ ++H KG + ++D+ E ER RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 413 TIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCS 553
T+ A+T + I D PGH DF + D A+LV+ S
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDS 288
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 40.7 bits (91), Expect = 2e-04
Identities = 30/118 (25%), Positives = 52/118 (44%)
Frame = +2
Query: 263 ISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSAATYTI 442
I H+D+GKT L + + + + +GA +E +Q+ +
Sbjct: 489 ILGHVDTGKTKLLDNLR--RSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQ- 545
Query: 443 WKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVP 616
+ + IIDTPGH FT R + + AILV+ + G++ QT+ R ++ P
Sbjct: 546 YNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTP 603
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 458 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVP 616
I +DTPGH+ F +R + D +LV+ GV+ QT+ + ++ +VP
Sbjct: 222 ITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQTVEAIKHIQSADVP 274
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 29.1 bits (62), Expect = 0.53
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 549 HNTNIAPSKTLNALSTSTVKSTCP--GVSIMLMLCSFQIVYVAADCIVIPL 403
H N+ + L S++K C + IML +CS Q+ +V ++PL
Sbjct: 224 HERNLCSIEKQTTLKNSSLKELCTEEDIVIMLEICSSQLPFVEQYMPILPL 274
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 197 QKYSSHVKYAEHKPLENIRNIGISAHIDSGKTTLTERIL 313
++YSS+ Y P +R IGI+ SGKT++ + I+
Sbjct: 6 ERYSSNPTY--EPPWRKVRFIGIAGPSGSGKTSVAQLIV 42
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 155 LKNTKKSSVFQIELQKYSSHVKYAEHKPLENIRNI-GISA 271
L+ T+K S ++K +KYA ++ L N+R GISA
Sbjct: 274 LQQTRKESKLWSFIKKVFHDIKYANYRLLHNLRAFPGISA 313
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 123 VILKYYIINNSNFIITVQWIFR 58
V+L Y +I++ N ++++ W+FR
Sbjct: 31 VLLIYLVIHSQNELVSMSWLFR 52
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 561 PPTEHNTNIAPSKTLNALSTSTVKS 487
PPTE + ++APS + +A ST + KS
Sbjct: 15 PPTESSAHLAPSFSDSATSTLSFKS 39
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 189 LSYRNIHHMSNMQNTNHWKIFEILVYQLT*TLERQHSLNVFCSILDE*TKCTRLKVKTML 368
+SY N+ + ++N E+LV ++ ++ + NV + +C R+ V+T L
Sbjct: 50 ISY-NVPPLIVLRNKTIRNSIEVLVEEMFRDIQMRQQTNVLVA------QCPRMIVETQL 102
Query: 369 VLLWTQWSWNVKEELQYSL 425
+ L+ +V EEL+ S+
Sbjct: 103 IGLFQSNYTSVAEELEQSI 121
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +2
Query: 131 YAFRLINALKNTKKSSVFQIELQKYSSHV---KYAEHKPLENIRNIGISAHIDSGKTT 295
YAF ++ K S+F E+ K H + H L N+ + D+ TT
Sbjct: 1220 YAFSKCPIVEKNSKKSIFSCEITKVEFHTAVPSSSHHDVLMEENNVHLDLTYDANYTT 1277
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 165 QKNRVYFKLSYRNIHHMSNMQNTNHWKIFEILVYQLT*TLERQHSLNVFCSI 320
Q NR+ Y ++ H+S+ ++W IL Y + +R++ L CSI
Sbjct: 408 QDNRLNIIQGYLDLVHLSDQDQYDNWFTSTILTYLVIDNDQRKYLL---CSI 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,198
Number of Sequences: 5004
Number of extensions: 56639
Number of successful extensions: 210
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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