Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0508
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 98 4e-21
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 73 1e-13
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08) 54 9e-08
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 40 0.002
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 36 0.034
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 34 0.11
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 32 0.32
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09) 30 1.7
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 29 4.0
SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3) 28 5.2
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 28 5.2
SB_53349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0) 28 6.9
SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6) 28 6.9
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 28 6.9
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 98.3 bits (234), Expect = 4e-21
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Frame = +2
Query: 251 RNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKG-KDNVGAVMDSMELERQRGITIQSA 427
R GI +H D+GKTTLTE++L + G I + VK K GA D ME+ERQRGI++ ++
Sbjct: 11 RTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKGATSDFMEIERQRGISVATS 70
Query: 428 ATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRY 607
+++ INI+DTPGH DF + R L +D I+V+ GV+ QT + +
Sbjct: 71 VLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVEVCRMR 130
Query: 608 NVP 616
N+P
Sbjct: 131 NIP 133
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 74.9 bits (176), Expect = 5e-14
Identities = 45/116 (38%), Positives = 67/116 (57%)
Frame = +2
Query: 236 PLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGIT 415
PLE +RN I AH+D GK+TL +R+L TG I K DN V+D +++ER+RGIT
Sbjct: 1937 PLERVRNFSIVAHVDHGKSTLADRLLEVTGTIS-----KSSDN-KQVLDKLQVERERGIT 1990
Query: 416 IQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 583
+++ GHVDF+ EV R+L G +L++ + GVQ+QT++
Sbjct: 1991 VKA-----------------QGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVS 2029
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 73.3 bits (172), Expect = 1e-13
Identities = 54/135 (40%), Positives = 72/135 (53%), Gaps = 18/135 (13%)
Frame = +2
Query: 245 NIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQS 424
NIRN+ + AH+D GK+TLT+ ++ G I K D+ + E+ R ITI+S
Sbjct: 17 NIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 425 AATYTIW----------------KEHN--INIIDTPGHVDFTVEVERALRVLDGAILVLC 550
A + KE IN+ID+PGHVDF+ EV ALRV DGA++V+
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 551 SVGGVQSQTLTVNRQ 595
V GV QT TV RQ
Sbjct: 132 CVSGVCVQTETVLRQ 146
>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
Length = 926
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
Frame = +2
Query: 347 VKGKDNVGAVMDSMELERQRGITIQSAATYTI---WKEHNINII 469
VKGKDNVGA MDSMELERQRGITIQS T T+ K +N+ I
Sbjct: 610 VKGKDNVGATMDSMELERQRGITIQS-QTLTVNRQMKRYNVPCI 652
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 563 VQSQTLTVNRQMKRYNVP 616
+QSQTLTVNRQMKRYNVP
Sbjct: 633 IQSQTLTVNRQMKRYNVP 650
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +2
Query: 350 KGKDNVGAVMDSMELERQRGITIQSAATYTIWKEHNINIIDTPGHVDF 493
KG V+D ++ ER+RGITI A ++ + +ID PGH DF
Sbjct: 3 KGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDF 50
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 458 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVP 616
I IDTPGH F R V D +LV+ + GV++QT+ R VP
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 464 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVP 616
IIDTPGH F+ R + D AILV+ + G++ QT+ +K+ P
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQTIESINLLKKRKTP 732
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 392 LERQRGITIQSAATYTIWK-EHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ 568
+E + G Q Y++ + I +DTPGH FT R +V D I+V+ + V
Sbjct: 117 IEGESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVM 176
Query: 569 SQTLTVNRQMKRYNVP 616
QT + VP
Sbjct: 177 PQTKEAISHAQAAGVP 192
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 236 PLENIR-NIGISAHIDSGKTTLTERILFYTGRIDQ 337
P E I NI + H+DSGK+T T +++ G ID+
Sbjct: 2 PKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 36
>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
Length = 1703
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 425 AATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILV 544
+AT I+KE IN++ TP +T + RV+ G +L+
Sbjct: 297 SATMEIYKEAMINLLPTPAKSHYTFNLRDFSRVVLGVLLI 336
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 254 NIGISAHIDSGKTTLTERI 310
NIG+ H+DSGKT+L + +
Sbjct: 37 NIGVLGHVDSGKTSLAKAL 55
>SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3)
Length = 462
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 574 LALNTTYRTQHQYRPI*NS*CSFYFYCEIYMSWSINNVNVMFLPN--SVCCSR 422
LA++T Y + + C + + M+WS++ V ++FL VCC R
Sbjct: 274 LAVSTAYEVMRVFWAV----CRYPVLVRVKMNWSVHRVCLLFLGEYLDVCCLR 322
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Frame = +2
Query: 299 TERILFYTGRIDQM------HEVKGKDN----VGAVMDSMELERQRGITIQSAATYTIWK 448
T+R + TG++D+ E K K+ + +D+ + ER +G T++
Sbjct: 161 TDRNGYLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTD 220
Query: 449 EHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 562
+ ++D PGH F + D +LV+ + G
Sbjct: 221 TKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKG 258
>SB_53349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +2
Query: 356 KDNVGAVMDSMELERQRGITIQSAATYTIWKE----HNINIIDTPGHVDFTVEVERALRV 523
KD G ++ E + + QS + + + E HNI I+ PG D + E+ L
Sbjct: 5 KDEDGESSENKNTEVNQRQSTQSVSEWETFSEEPTTHNITAIEGPGKTDHNISSEKYLET 64
Query: 524 L 526
L
Sbjct: 65 L 65
>SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0)
Length = 295
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 427 SRLYCNSSLTFQLH*VHNSTNIVFTFNLVHLVYSSSIEQNTFSECCLSRVYVS*YTNISN 248
S YC+ +F L+ N+TN LVHL+ ++ + + LS + V + +N
Sbjct: 219 SAFYCSGECSFPLNANMNATNHAIVQTLVHLMNPKTVPKPCCAPTELSPISVLYFDQDNN 278
Query: 247 I 245
+
Sbjct: 279 V 279
>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
Length = 410
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 153 RLKIQKNRVYFKLSY-RNIHHMSNMQNTNHWKIFEILVYQLT*TLERQH 296
RL +++ R++ K S RN++H+ N Q ++++ E V + + H
Sbjct: 85 RLSLKQLRIFRKFSMGRNMYHLQNNQMYRNFRLNEFFVLPVVLAVNTSH 133
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 446 KEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 562
K I ++D PGH DF + D AILV+ ++ G
Sbjct: 11 KNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49
>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -2
Query: 465 MLMLCSFQIVYVAADCIV 412
ML++C+FQ +YV ADC++
Sbjct: 489 MLLVCAFQFIYV-ADCLL 505
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,993,726
Number of Sequences: 59808
Number of extensions: 397872
Number of successful extensions: 896
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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