Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0507
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   4.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   7.9  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.9  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   7.9  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 461 ASIRCWRAGNA*SAVLANVPRVCSRLYNIGSRSHSGPPSPIYN 589
           +S+   R+ ++    L++VP   S L NI +R+ + PPS   N
Sbjct: 556 SSLNGQRSNSSVQRALSSVPNYSSSLSNISTRNLNIPPSNANN 598


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 694  LFPKHFSLLYNYTSLVELEFYFEIY 620
            ++  H SLL+++  +VEL+  F IY
Sbjct: 2701 VYQSHVSLLHHFQEIVELQEAFGIY 2725


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 450 LSSQRRFDAGGRETREALCLQMCLE 524
           +SS RRF   G   RE  C + C+E
Sbjct: 465 MSSHRRFPDWGDYQREVTCCRNCVE 489


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 241 GRLHAERSGVSHAGRPGSSPT-GDSSAPGHRPAPSG-PQVVP 122
           G LH  RS    +GRP  SP+    S P   P   G P+  P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTP 383


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 181 WGLTPADLHAIHRSAQHAIDQSRREQQMDNDMQE 282
           W L    +H        AI+QS+ E +MD D+ E
Sbjct: 738 WSLDDLLIHQKKALKSAAIEQSKHEDEMDIDVVE 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,000
Number of Sequences: 5004
Number of extensions: 45109
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)