Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0507
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0789 + 24630552-24631171,24631240-24631279,24632422-246324... 30 2.0
06_03_1210 + 28442253-28442967,28443338-28443405 29 2.6
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 29 2.6
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 29 2.6
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 29 3.5
02_05_0807 + 31870018-31870953 29 4.6
01_06_1568 - 38299113-38299790,38300165-38300254,38300368-383004... 29 4.6
01_01_1195 - 9567023-9567789,9567871-9568120 29 4.6
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 28 6.1
07_03_0944 + 22787933-22789906 28 8.1
02_05_0509 - 29630224-29630328,29630408-29630500,29630669-296307... 28 8.1
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310... 28 8.1
>06_03_0789 +
24630552-24631171,24631240-24631279,24632422-24632486,
24632615-24632660,24633222-24633314,24633736-24633855,
24633931-24633982,24634051-24634123,24634350-24634416,
24634670-24634720,24635026-24635118,24635207-24635308
Length = 473
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 82 VYQFVPQTAPTQEMEQ--PEGQKVQDGAPVQMSLPWGLTP 195
VY VP + Q P G+ + G P Q+ PWG+TP
Sbjct: 398 VYALVPGLLREEVHVQSDPAGRLIVTGEPEQLDNPWGVTP 437
>06_03_1210 + 28442253-28442967,28443338-28443405
Length = 260
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 60 PERATNYRLPVRAADSSYSRNGTT*GPEGAGRCPGAD 170
P RAT+ RLP + + R G + G GRC D
Sbjct: 58 PNRATSIRLPAGWSGRVWGRQGCSFDAAGRGRCATGD 94
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 351 RGTARRDPTSSAHAPSASGTTRL*REATLYAASLSSQRRFDAG 479
RGT + +P + +A L RE YAA+ + +RR + G
Sbjct: 97 RGTGKAEPKAVVNAEEVRAMDTLQRERKAYAAARARERRHEKG 139
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 477 GGRETREALCLQMCLESALDYITSARDRTA 566
GGR L+ LES L+++T+ARDR A
Sbjct: 44 GGRWAPPDQVLENVLESVLEFLTAARDRNA 73
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 247 VTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQ 131
+ GR A R+ A P S P + +P H PAPS PQ
Sbjct: 65 IPGRQAASRAPSPPA--PPSPPQASAPSPPHAPAPSPPQ 101
>02_05_0807 + 31870018-31870953
Length = 311
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 253 HGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVP 122
HG + R A R G P + G + P H+P GPQ P
Sbjct: 168 HGASPRSRAGRFAYVWVGNPATQCPGQCAWPYHQPV-YGPQAAP 210
>01_06_1568 -
38299113-38299790,38300165-38300254,38300368-38300484,
38300600-38300962
Length = 415
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 493 RVSRP--PASNRRCELSEAAYNVASRQSRVVPEAEGACAELVGSR 365
R+ RP PA+ ++A A+R+ VPEA G AE VG R
Sbjct: 271 RLPRPRLPAAPPATPAADAERADAARRGDAVPEAAGGGAEAVGER 315
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 253 HGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAP 143
H + R H E+SG +P SS + AP P P
Sbjct: 143 HVLMARRHREQSGAFRRRKPSSSSASPAPAPAPPPPP 179
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 229 AERSGVSHAGRPGSSPTGDSSAPGHRPAP-SGPQVVPF 119
+ R +H+ RPG SP SA G AP S P+V PF
Sbjct: 324 SSRPNSAHSSRPG-SPGSQVSAVGSEGAPRSRPKVNPF 360
>07_03_0944 + 22787933-22789906
Length = 657
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Frame = -1
Query: 301 CSR*FSLPACRCPFVVHGVTGRLHAERSGVSHA------GRPGSSPTGDSSAPGH 155
CSR +S CPFV G R R A RPG P+GDS H
Sbjct: 245 CSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSH 299
>02_05_0509 -
29630224-29630328,29630408-29630500,29630669-29630719,
29630864-29630930,29631181-29631227,29631300-29631350,
29631433-29631552,29632777-29632869,29633440-29633485,
29633577-29633629,29633800-29633839,29633938-29634623
Length = 483
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 82 VYQFVPQTAPTQEMEQ--PEGQKVQDGAPVQMSLPWGLTP 195
+Y VP + Q P G+ V G P Q PWG+TP
Sbjct: 407 IYALVPGLLREEVHVQSDPAGRLVITGDPEQPDNPWGITP 446
>01_01_0412 -
3099509-3099634,3099758-3099904,3099991-3100089,
3100171-3100602,3101121-3101599,3101683-3101728
Length = 442
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 36 SSTATPTRPERATNYRLPVRAADSSYSRNGTT*GPEGAGRCPGADESPVGLDP 194
+++AT + P RA+ LPVRA SS G +GR A S G+ P
Sbjct: 262 ATSATTSTPMRASQ-PLPVRAVASSRHARNVLIGHANSGRNRRARSSYYGIQP 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,279
Number of Sequences: 37544
Number of extensions: 372028
Number of successful extensions: 1434
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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