Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0507
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 30 2.0
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10) 29 2.7
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_10333| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=0.73) 29 4.7
SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 28 6.2
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 28 6.2
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06) 28 8.3
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 34.7 bits (76), Expect = 0.072
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +3
Query: 6 RNSARGDFCASSTATPTRPERATNYRLPVRAADSSYSRNGTT*GPEGAGRCPGADESPVG 185
R S+ GD + A P+ P R R P ++ S N + GP G GR P +
Sbjct: 477 RRSSSGDSMDHALARPSSPRRDQGRRNPDQSRIQRGSENESERGPRGDGRAPHPTQEGWS 536
Query: 186 LDPGRPACDTPLRS 227
+ + A PL S
Sbjct: 537 AERRKQAHTVPLTS 550
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 259 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPA 146
V++GVTG L S + PT D S P HRPA
Sbjct: 53 VINGVTGALAKTIPSSSPSKIAAYEPTPDPSRPPHRPA 90
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/77 (32%), Positives = 33/77 (42%)
Frame = +3
Query: 3 CRNSARGDFCASSTATPTRPERATNYRLPVRAADSSYSRNGTT*GPEGAGRCPGADESPV 182
C+N G +C + AT + Y P S +N T P G +CP SPV
Sbjct: 1771 CQNCTSGYYCPTQGATSVIFQCMQGYYCP-----SGSIQNDTVECPLGF-KCPTGVGSPV 1824
Query: 183 GLDPGRPACDTPLRSAC 233
DPG D+P + AC
Sbjct: 1825 RCDPGFHQ-DSPGQWAC 1840
>SB_58196| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-10)
Length = 334
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 532 RADSRHICKHSASRVSRPPASNRRCELSEAAYNVASRQ 419
RA R +CK++ +R +P A N C++S A + +RQ
Sbjct: 295 RAFKRLVCKYARNRSVQPIALNVVCDVSLPAITLGTRQ 332
>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 259 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPA 146
V++GVTG L + + PT D S P HRPA
Sbjct: 354 VINGVTGALAKTIPSSNPSKIAAYEPTPDPSRPPHRPA 391
>SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 259 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRP 149
V++GVTG L + + PT D+S P HRP
Sbjct: 148 VINGVTGALAKTIPSSNPSKIAAYEPTPDTSRPSHRP 184
>SB_10333| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=0.73)
Length = 150
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 94 VPQTAPTQEMEQPEGQKVQDGAPVQMS 174
VP T +E P+G + DG PVQ S
Sbjct: 63 VPSTPDKGTVESPKGNRTYDGVPVQES 89
>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 259 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRP 149
V++GVTG L S + PT D S P HRP
Sbjct: 134 VINGVTGALAKTIPSSSPSKIAAYEPTPDPSRPPHRP 170
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -1
Query: 250 GVTGRLHAERSGVSHA---GRPGSSPTGDSSAPGHRPAPSGP 134
G T +++ G S + G G GD S+P HR +PS P
Sbjct: 935 GTTSGVYSMGGGPSDSDDNGDRGDDGDGDGSSPSHRSSPSTP 976
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 206 CRSAGVKPHGRLICTGAPSCTFWPSG 129
C G KP G +CT C W +G
Sbjct: 323 CTGVGAKPSGTRLCTLTRYCPVWATG 348
>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
Length = 882
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 259 VVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRP 149
V++GVTG L + + PT D S P HRP
Sbjct: 252 VINGVTGALAKTIPSSNPSKIAAYEPTPDPSRPSHRP 288
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 190 SSPTGDSSAPGHRPAPSGPQ 131
S PT PGHRP P G Q
Sbjct: 1366 SRPTAPLPTPGHRPEPHGAQ 1385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,009,275
Number of Sequences: 59808
Number of extensions: 395575
Number of successful extensions: 1337
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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