Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0507
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 34 0.084
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 34 0.084
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 32 0.45
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 32 0.45
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 32 0.45
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 32 0.45
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 32 0.45
U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical pr... 30 1.4
U23411-1|AAC46730.2| 231|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 1.8
Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical pr... 29 2.4
U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical p... 29 3.2
AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical ... 29 3.2
U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical pr... 29 4.2
U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical pr... 29 4.2
U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical pr... 29 4.2
U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter... 29 4.2
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 29 4.2
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 28 5.5
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 7.3
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 9.6
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 34.3 bits (75), Expect = 0.084
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +3
Query: 123 GTT*GPEGAGRCPGADESPVGLDPGRPACDTPLRSACNRPVTP 251
GTT P+GA RC GADE V + +PA T R+ N V P
Sbjct: 139 GTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 34.3 bits (75), Expect = 0.084
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +3
Query: 123 GTT*GPEGAGRCPGADESPVGLDPGRPACDTPLRSACNRPVTP 251
GTT P+GA RC GADE V + +PA T R+ N V P
Sbjct: 139 GTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 221 ERCIACRSAGVKPHGRLICTGAPSCT 144
E C+ CR G+ P GR+ C PS T
Sbjct: 234 EGCLECRRCGISPAGRVNCVLCPSTT 259
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 217 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 122
G S+ G PG P GDS PGH R P+GP P
Sbjct: 213 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 244
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 217 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 122
G S+ G PG P GDS PGH R P+GP P
Sbjct: 277 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 308
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 217 GVSHAGRPGSSPTGDSSAPGH--RPAPSGPQVVP 122
G S+ G PG P GDS PGH R P+GP P
Sbjct: 277 GQSYQGPPG--PPGDSGTPGHEGRAGPNGPAGPP 308
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 221 ERCIACRSAGVKPHGRLICTGAPSCT 144
E C+ CR G+ P GR+ C PS T
Sbjct: 234 EGCLECRRCGISPAGRVNCVLCPSTT 259
>U40800-6|AAA81492.1| 171|Caenorhabditis elegans Hypothetical
protein D2096.6 protein.
Length = 171
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 150 GRCPGADESPVGLDPGRPACDTPLRSAC 233
G+CPG P+ DP RP P +S C
Sbjct: 50 GQCPGGPSLPIECDPKRPWPQCPPQSYC 77
>U23411-1|AAC46730.2| 231|Caenorhabditis elegans Hypothetical
protein T25E4.1 protein.
Length = 231
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 150 GRCPGADESPVGLDPGRPACDTPLRSAC 233
G+CPG P+ DP RP P +S C
Sbjct: 109 GQCPGGPSLPIECDPKRPWPQCPPQSYC 136
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 202 GRPGSSPTGDSSAPGHRPAPSGPQVVP 122
GRPG + G SS PG P P+GP P
Sbjct: 242 GRPGKNAQGGSSRPG-PPGPAGPPGPP 267
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 217 GVSHAGRPGSSPTGDSSAPGHRPAPSGP 134
GV G PG P GD+ +PG AP P
Sbjct: 216 GVGAPGAPG--PAGDAGSPGQPGAPGQP 241
>Z81521-4|CAB04229.1| 367|Caenorhabditis elegans Hypothetical
protein F32A11.6 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 485 GNA*SAVLANVPRVCSRLYNIGSRSHSGPPSPIYNLKHL 601
G+A S V ++ S ++ GS S SGPPSP L L
Sbjct: 22 GSADSGVFSSGVHASSPSHSQGSSSQSGPPSPTTQLNSL 60
>U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical
protein F46F11.8 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 488 NA*SAVLANVPRV-CSRLYNIGSRSHSGPPSPI 583
NA +V N+ R+ CSR YNI R HS PPS I
Sbjct: 295 NAKLSVFPNLDRLYCSR-YNIPYRRHSLPPSTI 326
>AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical
protein T24E12.10 protein.
Length = 632
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 382 QRTLLLPQEQHDFDERPHYMQPRSVRSVDSML 477
Q T P+ Q+D DE H++ +SV V + L
Sbjct: 548 QETSQSPENQYDIDEEAHHLSTQSVAPVKAFL 579
>U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical
protein M03A1.6b protein.
Length = 753
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -1
Query: 220 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 122
SG+ G PGSS P S P P PSG V P
Sbjct: 13 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 48
>U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6d protein.
Length = 762
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -1
Query: 220 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 122
SG+ G PGSS P S P P PSG V P
Sbjct: 22 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 57
>U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6c protein.
Length = 762
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -1
Query: 220 SGVSHAGRPGSS---PTGDSSAPGHRPAPSGPQVVP 122
SG+ G PGSS P S P P PSG V P
Sbjct: 22 SGLPSNGNPGSSTTVPPASKSGPVAPPRPSGTPVAP 57
>U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 17 protein.
Length = 352
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -1
Query: 241 GRLHAERSGVSHAGRPGSSPTGDSSAPG-HRPAPSGPQ 131
GR+ + G G GS P+G S G H P GPQ
Sbjct: 60 GRVRRQAGGYGGYGGYGSGPSGPSGPSGPHGGFPGGPQ 97
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -1
Query: 265 PFVVHGVTGRLHAERSGV-SHAGRPGSSPTG----DSSAPGHRPAP 143
PFV+H T RL + R+G+ + +G P+G D P + P P
Sbjct: 1090 PFVMHDYTARLTSNRNGIGAWSGSESIVPSGWGDWDGPEPDNSPMP 1135
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 232 HAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVP 122
H ++G S G PG P GD+ APG AP G Q P
Sbjct: 294 HPGQAGSSLPGAPG--PQGDAGAPGQPGAP-GQQGEP 327
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -1
Query: 229 AERSGVSHAGRPGSSPTGDSSAPGH--RPAPSG 137
A G S GRPG P G APG RP P G
Sbjct: 235 AGHPGSSGGGRPG--PAGPKGAPGQPGRPGPDG 265
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 214 VSHAGRPGSSPTGDSSAPGHRPAPSGPQVVPFLE*ELSAA 95
+ RP + G A RPAP+ P VP L+ L AA
Sbjct: 32 MGRVSRPAAPARGAPPAARGRPAPAAPANVPGLDPRLLAA 71
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 202 GRPG-SSPTGDSSAPGHRPAPSGP 134
G PG + P GD+ APG AP P
Sbjct: 172 GAPGPAGPEGDAGAPGDAGAPGAP 195
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 205 AGRPGSSPTGDSSAPGHRPAPSGP 134
AG G++P+G P P P GP
Sbjct: 195 AGADGNTPSGGGEGPAGPPGPPGP 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,387,590
Number of Sequences: 27780
Number of extensions: 296428
Number of successful extensions: 1288
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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