Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0507
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 30 1.3
At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi... 29 2.2
At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf... 29 2.2
At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containi... 29 2.9
At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containi... 29 2.9
At4g10190.1 68417.m01670 F-box family protein-related contains T... 28 6.8
At2g20300.1 68415.m02371 protein kinase family protein contains ... 28 6.8
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 8.9
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 27 8.9
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas... 27 8.9
At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containi... 27 8.9
At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ... 27 8.9
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 265 PFVVHGVTGRLHAERSGVSHAGRPGSSPTGDSSAPGHRPAPSGPQVVPFL 116
P VTG+ ++ G ++ G +P+G S PG R +GP P+L
Sbjct: 80 PIPTPAVTGQAKSKGGGKANPGH--KNPSGRHSKPGPRSNQNGPPPPPYL 127
>At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Chain A, Human Mrf-2 Domain
[Homo sapiens] GI:14278238; contains Pfam profile
PF01388: ARID/BRIGHT DNA binding domain
Length = 398
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 130 PEGQKVQDGAPVQMSLPWGLTP 195
P G+ V G P Q+ PWG+TP
Sbjct: 343 PAGKVVITGQPEQLDNPWGITP 364
>At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 311
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 202 GRPGSSPTGDSSAPGHRPAPSGP 134
GRP S P SSAPG RP P
Sbjct: 71 GRPDSDPNTSSSAPGKRPRGRPP 93
>At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 434
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 130 PEGQKVQDGAPVQMSLPWGLTP 195
P G+ V G P Q+ PWG+TP
Sbjct: 379 PAGRLVIAGQPEQLDNPWGITP 400
>At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 434
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 130 PEGQKVQDGAPVQMSLPWGLTP 195
P G+ V G P Q+ PWG+TP
Sbjct: 379 PAGRLVIAGQPEQLDNPWGITP 400
>At4g10190.1 68417.m01670 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 353
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 187 LTPADLHAIHRSAQHAIDQSRREQQMDNDMQEV 285
L DLH IH + + I Q R + + N ++EV
Sbjct: 55 LVSVDLHTIHNNKVNIISQLRLKDPLSNFLEEV 87
>At2g20300.1 68415.m02371 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 744
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 226 ERSGVSHAGRPGSSPTGD--SSAPGHRPAP 143
E + +S+ G P SSP GD APG P P
Sbjct: 212 EVTHISYPGIPSSSPNGDVTGDAPGGLPIP 241
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +3
Query: 33 ASSTATPTRPERATNYRLPVRAADSSYSRNGTT*GPEGAGRCPGADESPVGLDPG--RPA 206
++ TP P + + P A+ S + T P+ + PG SP G P +P+
Sbjct: 100 STPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPS 159
Query: 207 CDTPLRSACNRPVTP*TTN 263
TP + P P T+
Sbjct: 160 PSTPTPTTTTSPPPPPATS 178
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -1
Query: 208 HAGRPGSSPTGDSSAPG--HRPAPSGP 134
HA PGSS G + PG H P S P
Sbjct: 141 HAAAPGSSTPGSMTPPGGAHSPKSSSP 167
>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
reticulum-type (ECA2) nearly identical to SP|O23087
Calcium-transporting ATPase 2, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana};
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1054
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 257 CSRRDWSIAC*AERCIACRSAGVKPHGRLI-CTGAPS 150
C+ D ++ AE C C AGV G+L TG P+
Sbjct: 415 CNNMDANLQAVAEICSICNDAGVFYEGKLFRATGLPT 451
>At1g53330.1 68414.m06045 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 471
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 412 HDFDERPHYMQPRSVRSVDSML 477
H FDE P Y R+V+S++S+L
Sbjct: 104 HMFDEMPQYRCQRTVKSLNSLL 125
>At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3)
identical to papain-like cysteine peptidase XBCP3
GI:14600257 from [Arabidopsis thaliana]; contains Pfam
profiles PF00112: Papain family cysteine protease and
PF00396: Granulin
Length = 437
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -3
Query: 290 VFTSCMSLSICCSRRDWSIAC*AERCIACRSAGVKPHGRLICT-GAPSCTFWPSGC 126
+FT C S CC R+ C + +C SA GR C P C S C
Sbjct: 352 LFTYCSSGETCCCARELFGLCFSWKCCEIESAVCCKDGRHCCPHDYPVCDTTRSLC 407
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,115
Number of Sequences: 28952
Number of extensions: 258689
Number of successful extensions: 846
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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