Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0506
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    32   0.081
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    32   0.081
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.33 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.76 
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    28   1.3  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   1.8  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.3  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   3.1  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.3  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.1  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   9.3  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 484 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 311
           VK   + KR F+        +  H+ + + +  ++ +    F+VV+D  G+R A R    
Sbjct: 86  VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145

Query: 310 ARVG 299
            RVG
Sbjct: 146 GRVG 149


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 484 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 311
           VK   + KR F+        +  H+ + + +  ++ +    F+VV+D  G+R A R    
Sbjct: 86  VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145

Query: 310 ARVG 299
            RVG
Sbjct: 146 GRVG 149


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 207 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQ 79
           PSH  R  LHP ++ Q QP   S + G ++ + +Q P+ +  +Q
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQ 97


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 469 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLDG---LRGAVRVYSAARVG 299
           I +R  AG  + SLL   + VI V+H ++V      F  VL G   + G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 298 I 296
           I
Sbjct: 312 I 312


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/72 (20%), Positives = 32/72 (44%)
 Frame = -3

Query: 240 PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQNLITAE 61
           P    +RP    S+  P  H + A+    RH S    SS ++        S A+  I+  
Sbjct: 147 PQPSVRRPRFYSSYSYPSSHQDPAYSSFKRHRSSNSYSSSSNGNHVRFQPSIAEEEISFN 206

Query: 60  AIASEIHKQKNI 25
           + ++ ++ ++++
Sbjct: 207 SFSNSLNSEEDV 218


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 129 SSETSAKQTPATNSNAQNLITAEAIASE 46
           SS T+A  TP  + +++  I AEAIA E
Sbjct: 215 SSSTTALSTPRQSMDSKRTINAEAIAGE 242


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 395 VNCYDYMAIHKKGGYGCTGELP 460
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 20  LIIFFCLCISDAMASAVIRFCALLLVAGV 106
           LII+ C CIS A+A    +    +L+ GV
Sbjct: 154 LIIYVCFCISCALARNYAQLVISMLIMGV 182


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 146 LPSQGGVPKHRRNRLRQP 93
           L  +G + KHR+NRLR+P
Sbjct: 90  LKDEGKLGKHRKNRLRRP 107


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 213 VSPSHCRPCLHPEIAWQMQPRHT 145
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = -3

Query: 282 ERPLMVGFPASAQ*PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAK-Q 106
           ++P  +  P   + PHV +     S S   P +   +  +  P H S     S  S +  
Sbjct: 111 DKPSNIETPVKIESPHVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFRSHKSHRVA 170

Query: 105 TPATNSNAQNLITAEAIASEI 43
            P +  ++  L T+ A +  +
Sbjct: 171 VPMSFMDSSALHTSPAFSERL 191


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 412 VVIAVDHSVAVAVLAKSFHVVLDGLRGAVRVYSAARVG 299
           +VI  DH + V VLAK+   +++    A   Y A R+G
Sbjct: 279 LVIISDHFM-VPVLAKAIRTIIEAPEDASATYFAIRLG 315


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 240 PHVMRKRPHVSPSHCRPCLHPEI 172
           PH+++K  ++   H  PC+H E+
Sbjct: 241 PHLVQKSYYLQNRHVFPCVHWEV 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,752
Number of Sequences: 5004
Number of extensions: 60708
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)