Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0506
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical pr... 71 5e-13
AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical ... 66 2e-11
AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical ... 62 4e-10
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 39 0.003
U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 2.1
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 29 2.1
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 29 2.1
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 4.9
U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeo... 28 4.9
U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein. 28 4.9
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p4... 28 6.5
AF003740-7|AAC48142.2| 625|Caenorhabditis elegans Hypothetical ... 27 8.6
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 27 8.6
>U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical
protein F22A3.6a protein.
Length = 139
Score = 71.3 bits (167), Expect = 5e-13
Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +2
Query: 137 VTEVCLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDA 301
V+ CL CIC SGCK + C + +CG ++I GY+ D G+PT G + +A A
Sbjct: 16 VSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--A 72
Query: 302 YSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 481
+ C D CA V+NY R+ CNG G+ C H G GC Y N
Sbjct: 73 WKRCADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNGV 132
Query: 482 NQC 490
C
Sbjct: 133 KSC 135
>AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.3 protein.
Length = 139
Score = 66.5 bits (155), Expect = 2e-11
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +2
Query: 149 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPTI-NGLSPDAPDAYSSCT 316
CL CIC SGCK + +CG ++I Y+ D G+PT +G + +A A+ C
Sbjct: 20 CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCA 77
Query: 317 VDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 490
D CA V+NY R+ C G G C H G GC Y N C
Sbjct: 78 NDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNGIKSC 135
>AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.2 protein.
Length = 139
Score = 61.7 bits (143), Expect = 4e-10
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = +2
Query: 149 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSC 313
CL CIC SGCK + C + +CG ++I Y+ D G+P +G S + A+ C
Sbjct: 20 CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76
Query: 314 TVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 490
D CA V+NY R+ +C G G C H G GC Y + C
Sbjct: 77 ADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKGVHSC 135
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 197 QCEGETC-GLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMKRFGQ 373
QC C G F I Y+ D G+P A+ C D CA + NY R+
Sbjct: 20 QCMHCMCLGNFVIKLPYYIDCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKS 78
Query: 374 DCNGDGVVNC 403
CNG G+ C
Sbjct: 79 QCNGLGMSEC 88
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 329 CAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 490
C A + QNY R+ C+G G+ C + H G GC Y +C
Sbjct: 88 CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140
>U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical
protein C55F2.2 protein.
Length = 159
Score = 35.5 bits (78), Expect = 0.032
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Frame = +2
Query: 149 CLGCICQAISGCKQGLQCEGET-----CGLFRITWGYWADAGKPTINGLSPDAPDAYSSC 313
CL +C SGC L C + CG FR+ + +P + +A+ +C
Sbjct: 31 CLLAMCDQDSGCVP-LGCSVDQFDRIGCGYFRLNIYQFQQCYQPGKKDEDTEN-EAWMNC 88
Query: 314 TVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGC 445
D C+A ++ +F C G C IH G GC
Sbjct: 89 AQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/86 (31%), Positives = 34/86 (39%)
Frame = +3
Query: 255 PENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRRE 434
P N S +PT + T P PSKTT T T TA TT ST
Sbjct: 322 PANTKSSAHLDNSDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTV 379
Query: 435 ATGAPANFLLTM*TCLTSASMSSRST 512
T P T T+AS ++++T
Sbjct: 380 TTQKPTTVTSTTTLPSTTASTTTKTT 405
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +3
Query: 264 PPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATG 443
P + + + +PT + T P PSKTT T T TA TT ST T
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422
Query: 444 APANFLLTM*TCLTSASMSSRST 512
P T T+AS ++++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTT 445
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -2
Query: 484 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 311
VK + K F+ V H+ + + + ++ + F+VVLD G R A R +
Sbjct: 96 VKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAP 155
Query: 310 ARVG 299
RVG
Sbjct: 156 GRVG 159
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +3
Query: 297 MPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 476
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 495 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 552
Query: 477 CLTSASMSSRST 512
T+AS ++++T
Sbjct: 553 PSTTASTTTKTT 564
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 159 QPRHTSVTGGSSETSAKQTPATNSNAQNLITAEAIASEIHKQKNII 22
QP+ T++ S+ETS T AT + +A+ K+++ I
Sbjct: 452 QPKTTTIVASSTETSTVTTDATEATTTTTAPTTTVATTTTKKRSNI 497
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 302 YSSCTVDPYCAAQTVQNYMKRFGQDC-----NGDGVVNCYDYMAIH 424
Y +C VD Y A + + +G C N DG+ Y ++ IH
Sbjct: 86 YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131
>U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeobox
protein 20 protein.
Length = 338
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -2
Query: 616 KIILVLMETMTDYHKAVVGYSNLVGFLIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAP 440
+I ++ E + Y +A ++ V L++ QS +R + ++I+ +V YI++RKF G
Sbjct: 111 QIRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQ 167
Query: 439 V 437
V
Sbjct: 168 V 168
>U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein.
Length = 338
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -2
Query: 616 KIILVLMETMTDYHKAVVGYSNLVGFLIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAP 440
+I ++ E + Y +A ++ V L++ QS +R + ++I+ +V YI++RKF G
Sbjct: 111 QIRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQ 167
Query: 439 V 437
V
Sbjct: 168 V 168
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 321 TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANF 458
T+T + S+T + TATA TA+ WR T + A P +
Sbjct: 57 TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102
>AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 34A8 protein.
Length = 499
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 183 HPEIAWQMQPRHTSVTGGS---SETSAKQTPATNSN 85
HPE+ +++ T VTGG+ S T +TP N+N
Sbjct: 327 HPEVVEKLRKELTEVTGGTRGVSLTDRTKTPYLNAN 362
>AF003740-7|AAC48142.2| 625|Caenorhabditis elegans Hypothetical
protein C41D11.7 protein.
Length = 625
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 527 LSNQKPDQITVTYHCFMVIRHSFHQHQYYFYDESVT 634
L+ K D+I Y CF + FH + + D +VT
Sbjct: 506 LAESKKDEIRKLYDCFKNAKRRFHPNNAFGEDGNVT 541
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 475 VYIVKRKFAG---APVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLDGLRGAVRVYSAAR 305
VY + R F A V S +V++ + A+ HS+ V + + GLRG Y+ A
Sbjct: 208 VYALARVFIPNYTAQVISDIVNKRGIQALIHSIIVLTCLTATSSLFGGLRGGCFDYATAL 267
Query: 304 VGIR 293
V +R
Sbjct: 268 VTLR 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,278,818
Number of Sequences: 27780
Number of extensions: 374610
Number of successful extensions: 1041
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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