Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0505
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.43
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 28 0.98
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 0.98
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 28 1.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.3
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 2.3
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 2.3
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 27 3.0
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 27 3.0
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 4.0
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 4.0
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 6.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.9
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.1
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.1
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.5 bits (63), Expect = 0.43
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 330 IKTLPSPWTVVTAITKRKTMMNGTTNQGRSNKRTIVIPPMNQSRKLRGGVNQKESRKSHL 509
++ L P+ V A T +NG GRS ++ QSR G N K +SH+
Sbjct: 396 VRKLIGPYLVFMAST-----INGYEGTGRSLSLKLLQQLREQSRIYSGSGNNKSDSQSHI 450
Query: 510 TRRNLR 527
+ R L+
Sbjct: 451 SGRTLK 456
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 28.3 bits (60), Expect = 0.98
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +2
Query: 221 NIRDVHRRLWKKRLSDPNRSSKPYKYESQMAFMKAFYKDVAIPLDSGDCDYEEKDYDEWD 400
++R H+R ++ S PN+ K + S ++ D I + D D EEK W
Sbjct: 154 DLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILEDDEEIEDVASDKDEEEK---PWS 210
Query: 401 NESGQEQQENNSDSSDE 451
+ + + DS DE
Sbjct: 211 GDEEDDDELVVKDSEDE 227
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.3 bits (60), Expect = 0.98
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +2
Query: 131 YMDFNAREVTWQKIGDELKRPA----VDCKIRWINI-RDVHRRLWKKRLSDPNRSSKPYK 295
Y+ R K+ E K P+ V CK+ + +D+ +RL K D N+S++
Sbjct: 147 YLTITGRSGRTLKLSKEWKNPSKKWKVGCKLAYEFFPKDLRKRLQKLETEDMNKSNRKLL 206
Query: 296 YESQMAFMKAFYKDVAIPLDSGDCDYEEK 382
++ + K K PLD + +++
Sbjct: 207 QDATDEYAKFKDKFPEAPLDKDNLQTQKE 235
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 542 DTGATPELDPADPVDAFLISIASTLKTFSP 631
+ A+ E D DP+DA++ S+ T T P
Sbjct: 292 EQAASMEEDEVDPLDAYMASLVGTTDTIRP 321
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 281 SKPYKYE-SQMAFMKAFYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSDSS 445
S+P+ + S+ K + + + D + EE+D D+ D + +++ E+N++++
Sbjct: 172 SEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNNNNN 227
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +2
Query: 350 LDSGDCDYEEKDYDEWDNESGQEQQENNSDSS 445
+D Y + YDEWD ++ + N S
Sbjct: 63 VDDNGAGYVDNGYDEWDQSHYSDEDDENEKGS 94
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 203 CKIRWINIRDVHRRLWKKRLSDPNRSSKPYKY 298
C + +++D+HR+L +S+P ++ P Y
Sbjct: 2 CPSQHSSLKDIHRQLENTAISNPTENADPSSY 33
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +2
Query: 176 DELKRPAVDCKIRWINIRDVHRRLWKKRLSDPNRSSKPYKYESQMAFMKAFYKDVAIPLD 355
D LK A+ C + +N R++ L K R SKP S+ A +++ K+ + L
Sbjct: 176 DALKL-ALQCSEKALNGRNI---LIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILF 231
Query: 356 SGDCDYEEKDYD 391
G+ D+E D D
Sbjct: 232 VGNLDFETTDAD 243
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 161 WQKIGDELKRPAVDCKIRWINIRDVHR 241
W KIG ++ R DC+ RW RDV R
Sbjct: 335 WTKIGRKMARMPNDCRDRW---RDVVR 358
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 251 KKRLSDPNRSSKPYKYESQMAFMK-AFYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQE 427
K++ S+ P + E++ + + +F KDV + S + E++ E+ +ESG+ E
Sbjct: 21 KEKEKSKGVSNVPNEVETESSSHEPSFKKDVDEEIPSLTAELSEEEEGEYSSESGRSTPE 80
Query: 428 NNSDSSDE 451
+ D ++
Sbjct: 81 LSPDDFED 88
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 368 DYEEKDYDEWDNESGQEQQENNSDSSDE 451
D E E++ E+ QE +EN+SDS D+
Sbjct: 406 DNERMSPAEFELETTQEVEENDSDSHDD 433
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 6.9
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -2
Query: 219 IHLILQSTAGLFSSSPIFCHVTSRALKSMYLGLL*SYKTGFCFTKLINVTSVLSRNILLA 40
IH+ A LFS S +F H TS+ +K G L K +K + +SV +ILL+
Sbjct: 22 IHIDNSKVALLFSKSKVFVHPTSK-MKDNISGYLSLSK-----SKALGNSSVAGSDILLS 75
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 329 YKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSD 439
+ + IPL S DYE D E EQQ NS+
Sbjct: 34 FTSILIPLISKSKDYESIKNDRIVTEVNYEQQLRNSE 70
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 263 SDPNRSSKPYKYESQMAFMKAFYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSDS 442
S+ +R SK ++ +A +K+ + ++ LDS + E DE + E +EN+SD+
Sbjct: 573 SESDRLSKKWENPQLLAQLKSRFITGSL-LDSIEGQEEVSQDDEEGDFEDLEDEENSSDN 631
Query: 443 SDE 451
E
Sbjct: 632 EME 634
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 368 DYEEKDYDEWDNESGQEQQENNSDSSDEPI 457
DY+E D WD + G E ++++ ++ E +
Sbjct: 195 DYKEGDDSNWD-DFGSESEDDSKEAHSEEV 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,402
Number of Sequences: 5004
Number of extensions: 42218
Number of successful extensions: 160
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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