Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0505
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036701-6|AAK68607.1| 139|Caenorhabditis elegans Hypothetical ... 48 6e-06
Z81457-1|CAB03812.1| 423|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC006661-6|AAF39889.1| 312|Caenorhabditis elegans Hypothetical ... 40 0.001
U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 30 1.6
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 30 1.6
U39850-1|AAA81055.3| 618|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical ... 28 4.9
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 28 4.9
Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical pr... 28 6.4
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF067947-7|AAK68397.2| 295|Caenorhabditis elegans Hypothetical ... 28 6.4
Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 27 8.5
>AF036701-6|AAK68607.1| 139|Caenorhabditis elegans Hypothetical
protein ZC416.1 protein.
Length = 139
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/90 (28%), Positives = 46/90 (51%)
Frame = +2
Query: 68 DVTLISLVKQNPVLYDYNNPKYMDFNAREVTWQKIGDELKRPAVDCKIRWINIRDVHRRL 247
++ LI+ VK P LYD ++ Y + R W +I + L+ + K RW +RD +++
Sbjct: 50 NIRLIAEVKARPFLYDQSDEGYNLLSWRNSAWNEIAENLETTSEHVKTRWKTLRDRYKKE 109
Query: 248 WKKRLSDPNRSSKPYKYESQMAFMKAFYKD 337
KK SS + ++ + F++A KD
Sbjct: 110 EKKERVSKKASS--WVFQRPLKFIQAHLKD 137
>Z81457-1|CAB03812.1| 423|Caenorhabditis elegans Hypothetical
protein C01G12.1 protein.
Length = 423
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +2
Query: 53 FRDKTDVTLISLVKQNPVLYDYNNPKYMDFNAREVTWQKIGDELKR--PAVDCKIRWINI 226
F+ + LI+ V++ P LY+++ D R+ W+ I + A K RW+ +
Sbjct: 3 FQPAFNARLINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNCAAEFAKKRWLQL 62
Query: 227 RDVHRRLWKKRLSDPNRSSKPYKYESQMAFMKAFYKD-VAIPLDSGDCDYEEKDYDE 394
RD +R+ K + + + + Y +Q++++ F KD + D G + +DE
Sbjct: 63 RDRYRKELKIAIKNGFVTPVRWCYFNQLSWLDPFLKDNIGQAADEGKKTGKSDSFDE 119
>AC006661-6|AAF39889.1| 312|Caenorhabditis elegans Hypothetical
protein H20J04.3 protein.
Length = 312
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 77 LISLVKQNPVLYDYNNPKYMDFNAREVTWQKIGDELKRPAVDCKI--RWINIRD--VHRR 244
LI V+++P LYD +PKY + R W I D+L+ P I +W RD V +
Sbjct: 123 LILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYPGTVPSIYKQWKKHRDRYVREK 182
Query: 245 LWKKRLSDPN 274
+ L DPN
Sbjct: 183 RRLRNLGDPN 192
>U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical
protein M02F4.1 protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.52
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSD 448
D + DYE +DY+E +N+S + + + +D D
Sbjct: 218 DEDESDYENEDYEEEENKSRKANRRSRTDDDD 249
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
D + D +E+D +E +NES +E++++ + S+E
Sbjct: 588 DEEEEDEDEEDEEEEENESEEEEEDDEDEESEE 620
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
D + D +E+D +E +NES +E++++ + S+E
Sbjct: 598 DEEEEDEDEEDEEEEENESEEEEEDDEDEESEE 630
>U39850-1|AAA81055.3| 618|Caenorhabditis elegans Hypothetical
protein F52C9.5 protein.
Length = 618
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 332 KDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSDSSDEPI 457
+D +DS D K E +N ++ ++NN+D+S++P+
Sbjct: 511 RDCVDEIDSTDMRMSIKRAGELENNDHEQIEDNNTDASEDPV 552
>AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical
protein F55A12.5 protein.
Length = 849
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 260 LSDPNRSSKPYKYESQMAFMKAFYKDVAIPLDSGDCDYEEKD-YDEWDNESGQ----EQQ 424
LS S KY +M K + I +S + +YEE+D Y+E++++ + E++
Sbjct: 641 LSSGESSVVTVKYTPKMDVQKKKVEIPVISSESEEEEYEEEDEYEEYEDDEDEDEYYEEE 700
Query: 425 ENNSDSSDE 451
E N D+
Sbjct: 701 EENEVEDDD 709
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSD 439
D GD D+E K+ +E ++ E EN SD
Sbjct: 87 DDGDEDFEMKEAEEHESSDESEADENASD 115
>Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical
protein F36A2.9a protein.
Length = 528
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +3
Query: 390 MNGTTNQGRSNKRTIVIPPMNQSRKLRGGVNQKESRKSHLTRRNLRPPTSAILAP 554
+NGT +G + IV P +KL QKE +K+ LTR+N R + P
Sbjct: 452 INGTFTKGNHGRFEIVEEPQ---KKLEEA--QKEEQKALLTRQNTRAQSEQATTP 501
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 122 NPKYMDFNAREVTWQKIGDELKRPAVDC-KIRWINIRDVHRRLWKKR 259
NP + + E +K G E K P DC + N+ D R++KKR
Sbjct: 890 NPSKLSDSEYEEYKKKCGKERKTPKPDCDDVDTNNLSDEEYRMYKKR 936
>AF067947-7|AAK68397.2| 295|Caenorhabditis elegans Hypothetical
protein T10B5.3 protein.
Length = 295
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 362 DCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
D D E + D W++ +E +E N D DE
Sbjct: 235 DDDGESSEDDWWEDNELKEDEEENQDDDDE 264
>Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical
protein F54C9.9 protein.
Length = 740
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
D D DYE+ D + D +EQ+ ++ D DE
Sbjct: 409 DMEDSDYEDYDNLDVDELKREEQEADDDDEEDE 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,660
Number of Sequences: 27780
Number of extensions: 239448
Number of successful extensions: 955
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -