Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0505
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35180.1 68418.m04169 expressed protein 34 0.069
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 31 0.64
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain... 31 0.85
At1g48740.1 68414.m05454 expressed protein 30 1.1
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP... 30 1.5
At3g28110.1 68416.m03508 hypothetical protein 29 2.6
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ... 29 2.6
At5g66540.1 68418.m08389 expressed protein ; supported by full-L... 29 3.4
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ... 29 3.4
At3g04160.1 68416.m00440 expressed protein ; expression supporte... 29 3.4
At1g15420.1 68414.m01850 expressed protein 29 3.4
At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si... 28 6.0
At2g19600.1 68415.m02289 K+ efflux antiporter, putative (KEA4) s... 28 6.0
At1g49380.1 68414.m05535 cytochrome c biogenesis protein family ... 28 6.0
At1g47210.2 68414.m05226 cyclin family protein similar to A-type... 28 6.0
At1g47210.1 68414.m05225 cyclin family protein similar to A-type... 28 6.0
At5g63740.1 68418.m08000 zinc finger protein-related 27 7.9
At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein, chl... 27 7.9
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 27 7.9
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 27 7.9
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 27 7.9
At2g42260.1 68415.m05231 expressed protein and genefinder 27 7.9
>At5g35180.1 68418.m04169 expressed protein
Length = 778
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +2
Query: 290 YKYESQMAFMKAFYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
+KYE+ +++ ++DV + D + EE+ YD D+ SG+E +E SD DE
Sbjct: 447 FKYETSATVVQSKFQDVPNG-EYVDEEMEEQFYDATDSSSGEEDEE-ESDDDDE 498
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 31.1 bits (67), Expect = 0.64
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 441 PPMNQSRKLRGGVNQKES-RKSHLTRRNLRPPTSAILAPLQNSTP 572
P M Q++ G V++K+S R H + ++ PP+S +L L+ S+P
Sbjct: 362 PMMPQAKFTDGSVSRKDSLRVHHNSEASIPPPSSLLLQELRPSSP 406
>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 743
Score = 30.7 bits (66), Expect = 0.85
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 167 KIGDELKRPAVDCKIRWINI-RDVHRRLWKKRLSDPNRSSKPYKYESQMAFMKAFYKDVA 343
+I +E K K ++NI R+ +R++ L++ K E +K +V+
Sbjct: 183 EIAEEFKPKNQVFKKEYMNILRNAYRKV--SELAEVKMDWVKSKIEEVSLEIKKRNDEVS 240
Query: 344 -IPLDSGDCDYEEKDYDEWDNE 406
+PLD+ D ++ DYDEW+ +
Sbjct: 241 EVPLDNKIADDDDDDYDEWEQD 262
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 377 EKDYDEWDNESGQEQQENNSDSSD 448
EKD+ EW NE E++E S S D
Sbjct: 355 EKDFPEWCNECAHEKKEKESQSLD 378
>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
(VPS41) 99.8% identical to Vacuolar assembly protein
VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
similar to vacuolar assembly protein vps41 GI:1835787
from [Lycopersicon esculentum]
Length = 980
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 359 GDCDYEEKDYDEWDNESGQEQQENNSDSSDEP 454
GD + EE++ DE + E +E++EN ++ +EP
Sbjct: 12 GDDEREEEEEDE-EEEEEEEEEENGDEAEEEP 42
>At3g28110.1 68416.m03508 hypothetical protein
Length = 354
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +2
Query: 326 FYKDVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
FY+D+ + + + +E +Y++ DNE ++ ++ D+ E
Sbjct: 130 FYEDINVDEEDDIDEGDENEYEDEDNEEDEDMDVHDDDTDGE 171
>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
similar to GTL1 [Arabidopsis thaliana] GI:2664198
Length = 669
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +2
Query: 125 PKYMDFNAREVTWQKIGDELK-----RPAVDCKIRWINIRDVHRRLWKKRLSDP-NRSSK 286
P+Y D + + W++I +K R A CK +W NI ++++ + P + +
Sbjct: 453 PRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKRPQDAKTC 512
Query: 287 PYKYESQMAF 316
PY + + +
Sbjct: 513 PYFHRLDLLY 522
>At5g66540.1 68418.m08389 expressed protein ; supported by
full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
Length = 524
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
DS D D E+K+ + D+E G++++E D +E
Sbjct: 120 DSDDVDDEDKEIESNDSE-GEDEEEEEEDEEEE 151
>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein ;
contains Pfam profiles PF00331: Glycosyl hydrolase
family 10, PF02018: Carbohydrate binding domain
Length = 752
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 113 DYNNPKYMDFNAREVTWQKIGDELKRPAVDCKIRWINIRD 232
D +N ++DF + W G+ELK A + + +N +D
Sbjct: 420 DIDNEDFVDFFTKNFNWAVFGNELKWYATEAERGKVNYQD 459
>At3g04160.1 68416.m00440 expressed protein ; expression supported
by MPSS
Length = 712
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 335 DVAIPLDSGDCDYEEKDYDEWDNESGQEQQENNS 436
D+ P+D+ + K +DE+D+ S Q QQ + S
Sbjct: 594 DIEYPIDNRQNSDKVKRHDEYDSGSSQRQQSHRS 627
>At1g15420.1 68414.m01850 expressed protein
Length = 278
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSD 448
D G YE+KD DE + E +E E + ++ D
Sbjct: 227 DEGPVIYEDKDSDEDEEEGIEEAMETDEEADD 258
>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
similar to beta-galactosidase GI:7939621 from
[Lycopersicon esculentum]; contains Pfam profile PF01301
: Glycosyl hydrolases family 35
Length = 988
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 362 DCDYEEKDYDEWDNESGQEQQENNSDSSD 448
D D EE+D DE D+E +E+ + N D+ D
Sbjct: 782 DKDEEEED-DEDDDEEEEEEDKENKDTKD 809
>At2g19600.1 68415.m02289 K+ efflux antiporter, putative (KEA4)
similar to glutathione-regulated potassium-efflux system
protein KEFB, Escherichia coli, SWISSPROT:P45522;
Monovalent cation:proton antiporter family 2 (CPA2
family) member, PMID:11500563; Note: non-consensus
splice site (GC) in intron 14
Length = 592
Score = 27.9 bits (59), Expect = 6.0
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Frame = +2
Query: 155 VTWQKIGDELKRPAVDCKIRWINIRDVHRRLWKKRL--SDPNRSSKPYKYESQMAFMKAF 328
VT + G ++ A K R + D+ R +K +D N P + + +A +A
Sbjct: 47 VTREINGTVVESNATSAKPREDSFADMIDRALEKEFPDNDQNEVPDPGSFNNSVADQQAV 106
Query: 329 YKDVAI--PLDSGDCDYEEKDYDEWDNESGQEQQENNSDSSD 448
+ VA P + EEK + DNE+G E D D
Sbjct: 107 LETVARVKPKKNETKTKEEKSFFNLDNENGVEDTPRLIDRKD 148
>At1g49380.1 68414.m05535 cytochrome c biogenesis protein family
contains Pfam PF05140: ResB-like family; similar to CCS1
(GI:2749939) [Chlamydomonas reinhardtii]; similar to
Ccs1 (GI:6137102) [Synechococcus sp. PCC 6301]
Length = 547
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 115 LQQSQIHGF*RP*SNMAEDRRRTKETGCRLQN*MDKHKR 231
L S+IH F RP S + R + T C+LQ D ++R
Sbjct: 10 LHFSKIHPFSRPSSYLCRTRNVSLITNCKLQKPQDGNQR 48
>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 372
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 357 VVTAITKRKTMMNGTTNQGRSNKRTIVIPPMNQSRKLRGGVNQKESRKSHLTRRNLRPP 533
V A KRK + R NK+ +V+ + + N + +++ +RNL+PP
Sbjct: 10 VTRAAAKRKASTAMGIDGDRVNKKRVVLGELLNVSNVNLLANLNQKKETQKPKRNLKPP 68
>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 192
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 357 VVTAITKRKTMMNGTTNQGRSNKRTIVIPPMNQSRKLRGGVNQKESRKSHLTRRNLRPP 533
V A KRK + R NK+ +V+ + + N + +++ +RNL+PP
Sbjct: 10 VTRAAAKRKASTAMGIDGDRVNKKRVVLGELLNVSNVNLLANLNQKKETQKPKRNLKPP 68
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSSDE 451
D+ D D +E D DE D++ ++ +++ D +DE
Sbjct: 102 DADDADDDEDDDDE-DDDEDEDDDDDDDDENDE 133
>At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein,
chloroplast SP:Q9SW33;GI:17369630;PMID:11719511; similar
to expressed protein gi:12321169 {Oryza sativa}
Length = 225
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 521 PTTSNFGDTGATPELDPADPVDAFLISIASTLK 619
PT+S+F PE D DP++ +I ST K
Sbjct: 107 PTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQK 139
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +3
Query: 279 RPNPTNMSHKWHL*RHFIKTLPSPWTVVTAITKRKTMMNGTTNQGRSNKRTIVI 440
R N ++ W H I+ LP P +V K+ + +G +G + + I
Sbjct: 544 RQNIVHILENWLSAEHLIRRLPGPEAIVKQWVKQGELHHGPNEEGSPSSHMLPI 597
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 353 DSGDCDYEEKDYDEWDNESGQEQQENNSDSS 445
D GD +EE D E +N +G E NN + S
Sbjct: 629 DDGDYQFEE-DMPESNNNNGDENSSNNQNLS 658
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 371 YEEKDYDEWDNESGQEQQENNSDSSD 448
++E YD WD E G+ ++ + + D
Sbjct: 39 WKESSYDFWDGEKGKNDKKGDDEDED 64
>At2g42260.1 68415.m05231 expressed protein and genefinder
Length = 259
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +3
Query: 378 RKTMMNGTTNQGRSNKRTIVIP---PMNQSRKLRGGVNQKESRKSHL---TRRNLRPPTS 539
R+ M G T +GR+ V+P P R + V E R++ + R++ PT
Sbjct: 93 RENMSLGVTRRGRARASNSVLPSWYPRTPLRDISAVVRAIERRRARMGEGVGRDIETPTP 152
Query: 540 AILAPLQNSTPLT 578
L L + PL+
Sbjct: 153 QQLGVLDSLVPLS 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,241
Number of Sequences: 28952
Number of extensions: 226436
Number of successful extensions: 982
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -