Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0501
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z5J9 Cluster: Putative uncharacterized protein; n=3; ...    35   1.8  
UniRef50_A3DLC0 Cluster: CRISPR-associated protein Cas4; n=1; St...    35   1.8  
UniRef50_A4VG49 Cluster: Putative uncharacterized protein; n=1; ...    33   4.1  

>UniRef50_Q4Z5J9 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 504

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 381 SFYFESCFYKTRRSQNGS*VFTEVNYFGSMLLAIPCLCTILS 256
           SFYF  C   ++  +  + V  ++NYF   L   PC C  LS
Sbjct: 436 SFYFSQCTKGSKNEKIKNEVTNQINYFDKRLYTKPCKCMFLS 477


>UniRef50_A3DLC0 Cluster: CRISPR-associated protein Cas4; n=1;
           Staphylothermus marinus F1|Rep: CRISPR-associated
           protein Cas4 - Staphylothermus marinus (strain ATCC
           43588 / DSM 3639 / F1)
          Length = 187

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 301 WQY-VTGYTMLMYDTIFVP*INGSYLRPLKKTTIRKTAYNTQSYVISSL 158
           W+Y +T Y +L+ +T + P  N   + P  KTTI     N ++Y+I +L
Sbjct: 102 WKYTLTTYALLVEETYYKPVKNAILIMPGPKTTIINITSNDRNYIIKTL 150


>UniRef50_A4VG49 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas stutzeri A1501|Rep: Putative uncharacterized
           protein - Pseudomonas stutzeri (strain A1501)
          Length = 86

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 315 EVNYFGSMLLAIPCLCTILSSYRR 244
           EV Y G++LL + C+C ++++YRR
Sbjct: 7   EVLYLGALLLLVDCICCLIAAYRR 30


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,612,532
Number of Sequences: 1657284
Number of extensions: 10331772
Number of successful extensions: 20063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20059
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)