Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0501
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   3.8  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   5.0  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   5.0  

>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 15  TREGLSSFVSDLSLGLYNNKYIVY 86
           T+E +   + DLS GLY + Y+ +
Sbjct: 98  TQENIELIIEDLSKGLYESAYVCF 121


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 292 HTAKVIHLSENLRSVL*TTRFIKTAFEIKGFIDKLR 399
           H A+V HLS +   VL +  +  T F+ K F D+ R
Sbjct: 309 HAARVNHLSLSTEHVLRSGAYDHTDFKPKSFSDERR 344


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 109 LQIVNLCM*LPVTECIAVN*SHKIECCMLFYVSLSFS 219
           LQ + L M L +  C+ +   + + CC+ F VSLSF+
Sbjct: 74  LQKLRLKMDLRIIPCLWI--LYFLSCCLRFTVSLSFT 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,468
Number of Sequences: 5004
Number of extensions: 49563
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)