Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0501
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    30   1.7  
06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721...    28   5.1  
05_06_0022 + 24988363-24988453,24989102-24989325,24989433-249894...    27   8.9  
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922...    27   8.9  

>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
            1414639-1414725,1416244-1416411,1416785-1416958,
            1417662-1417720,1418132-1420154,1420549-1420647,
            1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 605  TTTPETLVFFVKFATSKKVVLC-SQSNL*PKMAKECLNG 492
            T T +    FVK   S    LC  Q NL P    ECLNG
Sbjct: 998  TLTTQMRAIFVKTLCSYSTGLCYEQRNLDPAFGPECLNG 1036


>06_01_0934 -
           7212408-7212794,7212887-7213416,7214192-7214302,
           7214322-7214811
          Length = 505

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 305 TLAVCYWLYHAYVRYYLRTVDKRFVPTSSEKDNDT*NSIQHSILCDQFTAMHSVTGSYIH 126
           ++ +C    +AY   +L   DKRF+    E    T  ++  SILC    ++    GS+  
Sbjct: 382 SITMCLQACNAYTSRFLNRADKRFLEDKEESSVYT--NVSQSILC---ISVLIAAGSFAA 436

Query: 125 KFT 117
            FT
Sbjct: 437 AFT 439


>05_06_0022 +
           24988363-24988453,24989102-24989325,24989433-24989494,
           24990219-24990440,24990740-24990869,24991373-24991698,
           24991910-24992051,24992169-24992414
          Length = 480

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 416 KDVIINLSLSINPFISKAVFIKRVVHR 336
           +DVI++ ++S  PF+ + + + R VHR
Sbjct: 264 RDVIMDGTMSWEPFVQQTITMARAVHR 290


>03_05_0398 +
           23790257-23790323,23791116-23791339,23792208-23792275,
           23794738-23794980,23795108-23795237,23797235-23797954
          Length = 483

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 416 KDVIINLSLSINPFISKAVFIKRVVHR 336
           +DVI++ +LS  PF+ + + + R VHR
Sbjct: 265 RDVILDGTLSWEPFVQQTIAMARDVHR 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,348
Number of Sequences: 37544
Number of extensions: 255210
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)