Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0501
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1637| Best HMM Match : Ion_trans (HMM E-Value=7.6e-10)              30   1.3  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   29   4.0  

>SB_1637| Best HMM Match : Ion_trans (HMM E-Value=7.6e-10)
          Length = 216

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 156 DAFSHWQLHT*IYNLQVLLQVKFNTQCIYYYINLNLNQTQKSSTLPSC 13
           D+   WQ     +N  V + V F    ++ YI+ N   TQ SSTL  C
Sbjct: 59  DSLGFWQTQ---FNNMVAVAVFFAWIKVFKYISFNKTMTQLSSTLSKC 103


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 606 NYNPRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAYEIQCAIFN 451
           N+      F+    N+   C + TK+ +T++ K + KW+ +N  E+   + N
Sbjct: 261 NFQVEESQFYVG-ANYINICHLHTKEWLTEDDKKLKKWIQDNFAEVTQKVIN 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,362
Number of Sequences: 59808
Number of extensions: 345825
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)