Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0501
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF025460-7|AAF02170.1|  119|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 597 PRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 475
           PR    FC+ C+       F K+ VTK  +G  K    N Y
Sbjct: 414 PRAVDSFCQYCSLYISLLYFIKKKVTKPAEGDKKSTPTNKY 454


>AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical
           protein Y18H1A.1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 597 PRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 475
           PR    FC+ C+       F K+ VTK  +G  K   +N Y
Sbjct: 357 PRAVDSFCQYCSLYISLLYFIKKKVTKPAEGDKKPTLSNKY 397


>AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical
           protein C24D10.1 protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 597 PRNPSFFCEICNFKEGCTVFTKQSVTKNGKGMFKWLSNNAY 475
           PR    FC+ C+       F K+ VTK   G  K    N Y
Sbjct: 414 PRAVDSFCQYCSLYISLLYFIKKKVTKPADGDKKSTPTNKY 454


>AF025460-7|AAF02170.1|  119|Caenorhabditis elegans Hypothetical
           protein F53A3.7 protein.
          Length = 119

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 585 SFFCEICNFKEGCTVFTKQSVTK 517
           S+ C++CN +EG   F K S  K
Sbjct: 38  SYTCKVCNSREGPKTFAKSSYEK 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,667
Number of Sequences: 27780
Number of extensions: 275061
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)