Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0500
         (477 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.038
UniRef50_Q197E4 Cluster: Putative uncharacterized protein; n=1; ...    31   10.0 

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.5 bits (88), Expect = 0.038
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 105 CIFYFFIAK*VGELTVHLVLSGYWSP 182
           C+  F + + V ELT HLVLSGYWSP
Sbjct: 150 CLSRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q197E4 Cluster: Putative uncharacterized protein; n=1; Aedes
            taeniorhynchus iridescent virus|Rep: Putative
            uncharacterized protein - Aedes taeniorhynchus iridescent
            virus
          Length = 1139

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 244  ILETLELISQGGWRIYVVNVYGLQYPLNTRWTVSSPTHLAIKK 116
            ++  L LIS    ++Y  NVY   Y   T +TV  P  LA+ K
Sbjct: 981  VMFNLRLISTVNLKVYAANVYHAFYQDVTNFTVPYPAQLALSK 1023


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,735,203
Number of Sequences: 1657284
Number of extensions: 9163096
Number of successful extensions: 17017
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17011
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)