Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0500
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   6.0  
SB_15789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 852

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 202 IYVVNVYGLQYPLNTRWTVSSPTHLAIKK*KMQHAYVS 89
           +    +  +Q  L T WT+SSP+H+ I   ++    +S
Sbjct: 674 LVTAGLIAVQLLLTTVWTISSPSHIHITYERLTRTVIS 711


>SB_15789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 26  QIFPLYNIIIVSIRIWPKI-DIRNIRML--HFLFFYC*MSGRTHSPPGVKWVLEPIDIYD 196
           Q+F LYN +   +   P + D  ++       +  YC   G  H P   +W   P+D +D
Sbjct: 144 QLFELYNFVKKHVNPSPVVLDADDLLEAPDEIMQSYCEAIGVDHEPGMTRWEPGPVDEWD 203

Query: 197 V 199
           V
Sbjct: 204 V 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,044
Number of Sequences: 59808
Number of extensions: 288737
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)