Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0500
         (477 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   2.4  
EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       22   9.6  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 2    RSLLNTNKQIFP-LYNIIIVSIRIWPKIDIRNIRMLHFLFFYC*MSGRTHSP 154
            R ++N   Q  P ++N+++V +  W    I  +++    +F C    +T  P
Sbjct: 1421 RVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCVDKNKTTLP 1472


>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +2

Query: 137 GRTHSPPGVKWVLEPIDIYDVNAPSTLRYKF 229
           G  H P   +    P+++Y V   +  R++F
Sbjct: 257 GTYHDPKKNETTQTPLEVYTVRRGARFRFRF 287


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,987
Number of Sequences: 2352
Number of extensions: 11203
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 42095889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)