Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0500
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    31   0.57 
AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical ...    28   4.0  
AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical ...    28   4.0  
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    27   5.3  
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +2

Query: 41  YNIIIVSIRIWPKIDIRNIRMLHFLFFYC*MSGRTHSPPGVKWVLEPIDIYDVNAP 208
           YN + + I I+  I    I  + +L +YC ++    SP   KW+ EPI  +D +AP
Sbjct: 591 YNAVSIPITIFCAIFY--IIFIAYLTYYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical
           protein F59A7.8 protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 STWC*VGTGAHRHLRRKCAIHL 216
           S WC  GT  H ++RRK  +HL
Sbjct: 310 SRWCLSGTPIHNNMRRKKIVHL 331


>AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical
           protein C05C8.1b protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 146 HSPPGVKWVLEPIDIYDV 199
           H+ PG++WVLE  + YDV
Sbjct: 17  HNIPGLRWVLEGFNNYDV 34


>AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical
           protein C05C8.1a protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 146 HSPPGVKWVLEPIDIYDV 199
           H+ PG++WVLE  + YDV
Sbjct: 17  HNIPGLRWVLEGFNNYDV 34


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 143 FAHSFSNKKIKNAACVCF*CRFLAKFL 63
           F+   +NKK+KN+   CF  +F AK+L
Sbjct: 3   FSKKKTNKKLKNSGKNCFFFQFSAKYL 29


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 247 TILETLELISQGGWRIYVVNVYGLQYPLNT 158
           T+L  +E+ S+ G RI  VN+ G ++ LNT
Sbjct: 314 TVLTIMEIKSESGLRILAVNILG-RFLLNT 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,582
Number of Sequences: 27780
Number of extensions: 230530
Number of successful extensions: 473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)