Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0499
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 62 4e-11
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 1.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 1.9
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 5.7
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.7
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 5.7
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 7.5
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 10.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 10.0
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 62.5 bits (145), Expect = 4e-11
Identities = 37/138 (26%), Positives = 65/138 (47%)
Frame = +2
Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 494 ALFQLMEPTVTIRVRQTD 547
A+ L EP + RQ D
Sbjct: 123 AMELLGEPVGIVYSRQRD 140
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 392 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 517
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 12 LQEEARLIGVDFFPRASH*FSGSI-SAVFRVSGVKNKQQPWRSAMQM 149
++E+AR+IG+DF S + S +FR++ +N P SA Q+
Sbjct: 881 IREQARIIGIDFMSVISRGSQFKVESIMFRIAKPENYIFPSPSAKQV 927
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 5.7
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 523 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 347
+S F +EESL K + F + + S ++ I+ I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 133 RHGCCLFLTPLTRNTADIE 77
RHGCC+ L R DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 404 YVRDLHALSVPSDEL 360
+V DLHAL+VP D L
Sbjct: 56 FVADLHALTVPQDPL 70
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 350 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 457
M +QARL+ L K+R+ + ++ +K LAE+ +D K
Sbjct: 92 MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 347 SKIGSSSEVQPASPSFHSI 291
S +G+SS+ + P FHS+
Sbjct: 164 SSVGNSSDFREVEPGFHSV 182
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 541 LTDADGDSGFHELEESLHNKCDQQL*VQFGV 449
+ D+ +SG HE+ + L N DQQL Q +
Sbjct: 507 ILDSLRESGIHEVIQLLRNFPDQQLEKQLNI 537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,346
Number of Sequences: 5004
Number of extensions: 33908
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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