Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0499
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    83   1e-16
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    73   2e-13
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    67   8e-12
09_02_0115 + 4413714-4414475                                           30   1.1  
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    29   2.5  
12_02_0312 + 17395716-17398112                                         29   3.3  

>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 48/138 (34%), Positives = 72/138 (52%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ KI         
Sbjct: 1   MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  I+ S  LN +R+KVL+ ++D V ++ ++A K+L  V  +   Y  LL  L+VQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120

Query: 494 ALFQLMEPTVTIRVRQTD 547
            L +L EP V +R R+ D
Sbjct: 121 GLLRLKEPAVLLRCRKED 138


>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ +I         
Sbjct: 1   MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 490
                  I+ S  LN AR+KVL+ ++  V  + ++A K L  V KD   Y ++L  LIV 
Sbjct: 61  QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120

Query: 491 ----------QALFQLMEPTVTIRVRQTDK 550
                     Q+L +L EP+V +R R+ D+
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADR 150


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           ++D DV +Q+K M  FI Q                F IEK +LV+ ++ +I         
Sbjct: 2   MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 490
                  I+ S  LN +RL+VL+ ++D   ++L+ A K L  + +D  +Y  LL   IV 
Sbjct: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121

Query: 491 ---------QALFQLMEPTVTIRVRQTDKAL 556
                    Q+L +L EP V +R R+ D+ L
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDREL 152


>09_02_0115 + 4413714-4414475
          Length = 253

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 463 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGS 555
           LR   H+  + SLP    H HHPRP   +GS
Sbjct: 20  LRLFSHSSASASLPLLLGHFHHPRPVPPRGS 50


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 362 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 496
           +RL++LK R+D++ N LD+A K+  E   D   + E  V   +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 335 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 478
           ++ +N+ N   L VLK+  D + + L      L+  PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,091
Number of Sequences: 37544
Number of extensions: 264193
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)