Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0499
         (557 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76228-1|CAA53814.1|  226|Homo sapiens vacuolar H+ ATPase E subu...   135   1e-31
X71491-1|CAA50592.1|  226|Homo sapiens vacuolar proton ATPase pr...   135   1e-31
CR456385-1|CAG30271.1|  226|Homo sapiens ATP6E protein.               135   1e-31
BT007128-1|AAP35792.1|  226|Homo sapiens ATPase, H+ transporting...   135   1e-31
BC004443-1|AAH04443.1|  226|Homo sapiens ATPase, H+ transporting...   135   1e-31
BC034808-1|AAH34808.1|  226|Homo sapiens ATPase, H+ transporting...   118   1e-26
BC008981-1|AAH08981.1|  226|Homo sapiens ATPase, H+ transporting...   118   1e-26
AK058055-1|BAB71643.1|  226|Homo sapiens protein ( Homo sapiens ...   118   1e-26
AC018682-1|AAY14833.1|  226|Homo sapiens unknown protein.             118   1e-26
AB074759-1|BAC00847.1|  226|Homo sapiens V-ATPase E1 subunit pro...   118   1e-26
BC112028-1|AAI12029.1|  259|Homo sapiens hypothetical protein FL...    36   0.096
BC112026-1|AAI12027.1|  259|Homo sapiens hypothetical protein LO...    36   0.096
AK097823-1|BAC05178.1|  259|Homo sapiens protein ( Homo sapiens ...    36   0.096
U68162-2|AAB08425.1|  628|Homo sapiens thrombopoietin receptor p...    30   4.8  
U68162-1|AAB08424.1|  635|Homo sapiens thrombopoietin receptor p...    30   4.8  
M90102-1|AAA69971.1|  635|Homo sapiens c-myeloproliferative leuk...    30   4.8  
DQ234353-1|ABB29982.1|  628|Homo sapiens myeloproliferative leuk...    30   4.8  
AL139289-2|CAI23380.1|  635|Homo sapiens myeloproliferative leuk...    30   4.8  
DQ493870-1|ABF48723.1| 2458|Homo sapiens acetyl-Coenzyme A carbo...    29   8.4  
BC028417-1|AAH28417.1|  858|Homo sapiens ACACB protein protein.        29   8.4  
AY382667-1|AAR37018.1| 2458|Homo sapiens acetyl-CoA carboxylase ...    29   8.4  
AJ575592-1|CAE01471.3| 2458|Homo sapiens Acetyl-CoA carboxylase ...    29   8.4  
AB209110-1|BAD92347.1| 1689|Homo sapiens Acetyl-CoA carboxylase ...    29   8.4  

>X76228-1|CAA53814.1|  226|Homo sapiens vacuolar H+ ATPase E subunit
           protein.
          Length = 226

 Score =  135 bits (326), Expect = 1e-31
 Identities = 71/138 (51%), Positives = 90/138 (65%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSDADVQKQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  IQ SN++NQARLKVL+ R+D + ++L+EA++RL++V KDT  Y  LL  L++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTD 547
            L+QL+EP + +R R+ D
Sbjct: 123 GLYQLLEPRMIVRCRKQD 140


>X71491-1|CAA50592.1|  226|Homo sapiens vacuolar proton ATPase
           protein.
          Length = 226

 Score =  135 bits (326), Expect = 1e-31
 Identities = 71/138 (51%), Positives = 90/138 (65%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSDADVQKQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDRKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  IQ SN++NQARLKVL+ R+D + ++L+EA++RL++V KDT  Y  LL  L++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTD 547
            L+QL+EP + +R R+ D
Sbjct: 123 GLYQLLEPRMIVRCRKQD 140


>CR456385-1|CAG30271.1|  226|Homo sapiens ATP6E protein.
          Length = 226

 Score =  135 bits (326), Expect = 1e-31
 Identities = 71/138 (51%), Positives = 90/138 (65%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSDADVQKQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  IQ SN++NQARLKVL+ R+D + ++L+EA++RL++V KDT  Y  LL  L++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTD 547
            L+QL+EP + +R R+ D
Sbjct: 123 GLYQLLEPRMIVRCRKQD 140


>BT007128-1|AAP35792.1|  226|Homo sapiens ATPase, H+ transporting,
           lysosomal 31kDa, V1 subunit E isoform 1 protein.
          Length = 226

 Score =  135 bits (326), Expect = 1e-31
 Identities = 71/138 (51%), Positives = 90/138 (65%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSDADVQKQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  IQ SN++NQARLKVL+ R+D + ++L+EA++RL++V KDT  Y  LL  L++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTD 547
            L+QL+EP + +R R+ D
Sbjct: 123 GLYQLLEPRMIVRCRKQD 140


>BC004443-1|AAH04443.1|  226|Homo sapiens ATPase, H+ transporting,
           lysosomal 31kDa, V1 subunit E1 protein.
          Length = 226

 Score =  135 bits (326), Expect = 1e-31
 Identities = 71/138 (51%), Positives = 90/138 (65%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSDADVQKQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  IQ SN++NQARLKVL+ R+D + ++L+EA++RL++V KDT  Y  LL  L++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTD 547
            L+QL+EP + +R R+ D
Sbjct: 123 GLYQLLEPRMIVRCRKQD 140


>BC034808-1|AAH34808.1|  226|Homo sapiens ATPase, H+ transporting,
           lysosomal 31kDa, V1 subunit E2 protein.
          Length = 226

 Score =  118 bits (285), Expect = 1e-26
 Identities = 65/141 (46%), Positives = 82/141 (58%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSD DV+KQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  I  S M NQARLKVL+ R D + ++L EA+ RL+ + +D ++Y  LL  L++Q
Sbjct: 63  QIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTDKAL 556
            L +L+EP + +R R  D  L
Sbjct: 123 GLLRLLEPVMIVRCRPQDLLL 143


>BC008981-1|AAH08981.1|  226|Homo sapiens ATPase, H+ transporting,
           lysosomal 31kDa, V1 subunit E2 protein.
          Length = 226

 Score =  118 bits (285), Expect = 1e-26
 Identities = 65/141 (46%), Positives = 82/141 (58%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSD DV+KQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  I  S M NQARLKVL+ R D + ++L EA+ RL+ + +D ++Y  LL  L++Q
Sbjct: 63  QIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTDKAL 556
            L +L+EP + +R R  D  L
Sbjct: 123 GLLRLLEPVMIVRCRPQDLLL 143


>AK058055-1|BAB71643.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25326 fis, clone TST00424. ).
          Length = 226

 Score =  118 bits (285), Expect = 1e-26
 Identities = 65/141 (46%), Positives = 82/141 (58%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSD DV+KQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  I  S M NQARLKVL+ R D + ++L EA+ RL+ + +D ++Y  LL  L++Q
Sbjct: 63  QIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTDKAL 556
            L +L+EP + +R R  D  L
Sbjct: 123 GLLRLLEPVMIVRCRPQDLLL 143


>AC018682-1|AAY14833.1|  226|Homo sapiens unknown protein.
          Length = 226

 Score =  118 bits (285), Expect = 1e-26
 Identities = 65/141 (46%), Positives = 82/141 (58%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSD DV+KQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  I  S M NQARLKVL+ R D + ++L EA+ RL+ + +D ++Y  LL  L++Q
Sbjct: 63  QIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTDKAL 556
            L +L+EP + +R R  D  L
Sbjct: 123 GLLRLLEPVMIVRCRPQDLLL 143


>AB074759-1|BAC00847.1|  226|Homo sapiens V-ATPase E1 subunit
           protein.
          Length = 226

 Score =  118 bits (285), Expect = 1e-26
 Identities = 65/141 (46%), Positives = 82/141 (58%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           LSD DV+KQIKHMMAFIEQ                FNIEKGRLVQ QRLKIM        
Sbjct: 3   LSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  I  S M NQARLKVL+ R D + ++L EA+ RL+ + +D ++Y  LL  L++Q
Sbjct: 63  QIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQ 122

Query: 494 ALFQLMEPTVTIRVRQTDKAL 556
            L +L+EP + +R R  D  L
Sbjct: 123 GLLRLLEPVMIVRCRPQDLLL 143


>BC112028-1|AAI12029.1|  259|Homo sapiens hypothetical protein
           FLJ40504 protein.
          Length = 259

 Score = 35.9 bits (79), Expect = 0.096
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = -1

Query: 476 PAALSTVW------CPLALQPGACELHQVHYVRDLHALSVPSDELGS-ACSKIGSS 330
           P+AL+  W      CPLAL PG  ELH  H +  LH L VP    G+  C+++ SS
Sbjct: 15  PSALTKNWPSKPESCPLALLPGQHELH--HLLHPLHQLPVPGHCPGTQLCAQLVSS 68


>BC112026-1|AAI12027.1|  259|Homo sapiens hypothetical protein
           LOC284085 protein.
          Length = 259

 Score = 35.9 bits (79), Expect = 0.096
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = -1

Query: 476 PAALSTVW------CPLALQPGACELHQVHYVRDLHALSVPSDELGS-ACSKIGSS 330
           P+AL+  W      CPLAL PG  ELH  H +  LH L VP    G+  C+++ SS
Sbjct: 15  PSALTKNWPSKPESCPLALLPGQHELH--HLLHPLHQLPVPGHCPGTQLCAQLVSS 68


>AK097823-1|BAC05178.1|  259|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40504 fis, clone TESTI2045509, highly similar to
           KERATIN, TYPE I CYTOSKELETAL 18. ).
          Length = 259

 Score = 35.9 bits (79), Expect = 0.096
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = -1

Query: 476 PAALSTVW------CPLALQPGACELHQVHYVRDLHALSVPSDELGS-ACSKIGSS 330
           P+AL+  W      CPLAL PG  ELH  H +  LH L VP    G+  C+++ SS
Sbjct: 15  PSALTKNWPSKPESCPLALLPGQHELH--HLLHPLHQLPVPGHCPGTQLCAQLVSS 68


>U68162-2|AAB08425.1|  628|Homo sapiens thrombopoietin receptor
           protein.
          Length = 628

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 443 ALQPGACELHQV--HYVRDLHALSVPSDELGSACSKIGSS-SEVQPASPSFHSIP 288
           AL P   +LH+V   Y+RD  ALS P   +   C ++  S  E+ P S     +P
Sbjct: 520 ALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLP 574


>U68162-1|AAB08424.1|  635|Homo sapiens thrombopoietin receptor
           protein.
          Length = 635

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 443 ALQPGACELHQV--HYVRDLHALSVPSDELGSACSKIGSS-SEVQPASPSFHSIP 288
           AL P   +LH+V   Y+RD  ALS P   +   C ++  S  E+ P S     +P
Sbjct: 527 ALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLP 581


>M90102-1|AAA69971.1|  635|Homo sapiens c-myeloproliferative
           leukemia virus type P protein.
          Length = 635

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 443 ALQPGACELHQV--HYVRDLHALSVPSDELGSACSKIGSS-SEVQPASPSFHSIP 288
           AL P   +LH+V   Y+RD  ALS P   +   C ++  S  E+ P S     +P
Sbjct: 527 ALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLP 581


>DQ234353-1|ABB29982.1|  628|Homo sapiens myeloproliferative
           leukemia virus oncogene protein.
          Length = 628

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 443 ALQPGACELHQV--HYVRDLHALSVPSDELGSACSKIGSS-SEVQPASPSFHSIP 288
           AL P   +LH+V   Y+RD  ALS P   +   C ++  S  E+ P S     +P
Sbjct: 520 ALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLP 574


>AL139289-2|CAI23380.1|  635|Homo sapiens myeloproliferative
           leukemia virus oncogene protein.
          Length = 635

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 443 ALQPGACELHQV--HYVRDLHALSVPSDELGSACSKIGSS-SEVQPASPSFHSIP 288
           AL P   +LH+V   Y+RD  ALS P   +   C ++  S  E+ P S     +P
Sbjct: 527 ALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLP 581


>DQ493870-1|ABF48723.1| 2458|Homo sapiens acetyl-Coenzyme A
            carboxylase 2 protein.
          Length = 2458

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 389  EDHVRNVLDEARKRLAEVPKDTKLYSELLVTL 484
            ED  RN  DE     A VPKDT L+SE   +L
Sbjct: 1376 EDFTRN-FDEVISCFANVPKDTPLFSEARTSL 1406


>BC028417-1|AAH28417.1|  858|Homo sapiens ACACB protein protein.
          Length = 858

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 389 EDHVRNVLDEARKRLAEVPKDTKLYSELLVTL 484
           ED  RN  DE     A VPKDT L+SE   +L
Sbjct: 42  EDFTRN-FDEVISCFANVPKDTPLFSEARTSL 72


>AY382667-1|AAR37018.1| 2458|Homo sapiens acetyl-CoA carboxylase 2
            protein.
          Length = 2458

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 389  EDHVRNVLDEARKRLAEVPKDTKLYSELLVTL 484
            ED  RN  DE     A VPKDT L+SE   +L
Sbjct: 1376 EDFTRN-FDEVISCFANVPKDTPLFSEARTSL 1406


>AJ575592-1|CAE01471.3| 2458|Homo sapiens Acetyl-CoA carboxylase 2
            protein.
          Length = 2458

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 389  EDHVRNVLDEARKRLAEVPKDTKLYSELLVTL 484
            ED  RN  DE     A VPKDT L+SE   +L
Sbjct: 1376 EDFTRN-FDEVISCFANVPKDTPLFSEARTSL 1406


>AB209110-1|BAD92347.1| 1689|Homo sapiens Acetyl-CoA carboxylase 2
           variant protein.
          Length = 1689

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 389 EDHVRNVLDEARKRLAEVPKDTKLYSELLVTL 484
           ED  RN  DE     A VPKDT L+SE   +L
Sbjct: 607 EDFTRN-FDEVISCFANVPKDTPLFSEARTSL 637


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,886,097
Number of Sequences: 237096
Number of extensions: 1419510
Number of successful extensions: 3460
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3450
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)