Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0499
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   122   2e-28
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    27   6.9  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  122 bits (294), Expect = 2e-28
 Identities = 66/141 (46%), Positives = 80/141 (56%)
 Frame = +2

Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 494 ALFQLMEPTVTIRVRQTDKAL 556
            L QL+E  V +R R+ D  L
Sbjct: 123 GLLQLLEKEVVLRCREKDLRL 143


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 419 LHQVHYVRDLHALSVPSDELG 357
           LH++ YV D H + VP D  G
Sbjct: 515 LHKLDYVADAHVVGVPDDRYG 535


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 331 EDPIFEHAEPSSSEGTESA*RSRT 402
           E PI E +EP SSE +ES  RSR+
Sbjct: 369 ELPILEVSEPGSSEPSESRTRSRS 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,714
Number of Sequences: 27780
Number of extensions: 202469
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)