Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0499
(557 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 86 2e-17
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 82 3e-16
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 71 5e-13
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 1.6
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 1.6
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 28 3.7
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 28 3.7
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 28 4.9
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 27 6.4
At4g34630.1 68417.m04918 expressed protein 27 8.5
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f... 27 8.5
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 85.8 bits (203), Expect = 2e-17
Identities = 50/141 (35%), Positives = 72/141 (51%)
Frame = +2
Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
++D DV +QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60
Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
I S LN +R+KVL+ ++D V + D+A K L V +D Y +LL LIVQ
Sbjct: 61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120
Query: 494 ALFQLMEPTVTIRVRQTDKAL 556
L +L EP+V +R R+ D L
Sbjct: 121 CLLRLKEPSVLLRCREEDLGL 141
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 81.8 bits (193), Expect = 3e-16
Identities = 46/139 (33%), Positives = 71/139 (51%)
Frame = +2
Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
++DADV KQI+ M+ FI Q FNIE+ +L++ + K+
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60
Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 493
I S LN +R+K L+ ++D V + D A K L V D Y +LL +LI++
Sbjct: 61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120
Query: 494 ALFQLMEPTVTIRVRQTDK 550
+L +L EP+V +R R+ DK
Sbjct: 121 SLLRLKEPSVLLRCREMDK 139
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 70.9 bits (166), Expect = 5e-13
Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 6/144 (4%)
Frame = +2
Query: 134 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 313
++DAD QI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 314 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKL------YSELL 475
I S LN +R+KVL+ ++D V + +EA K+L +V + Y LL
Sbjct: 61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120
Query: 476 VTLIVQALFQLMEPTVTIRVRQTD 547
LIVQ L +L EP V +R R+ D
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREED 144
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 76 ALYRPCFVLVVLKISSSHGAQRCRCSETDQAHDG 177
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 508 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 541
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 76 ALYRPCFVLVVLKISSSHGAQRCRCSETDQAHDG 177
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 505 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 538
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 449 PLALQPGACELHQVHYVRDLHALSVPSDELGSAC 348
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 323 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 356
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 449 PLALQPGACELHQVHYVRDLHALSVPSDELGSAC 348
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 362 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 395
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 368 LKVLKVREDHVRNVLDEARKRLAEV 442
LK +KV+ED N+LDE ++ L+EV
Sbjct: 54 LKRIKVQEDRGLNLLDEVQQWLSEV 78
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 70 FLALYRPCFVLVVLKISSSHGAQRCRCSETDQAHDGLH 183
F+ L PC V +L ++ SHGA C T G H
Sbjct: 704 FIYLSEPCHVCQLL-LTISHGADDLTCPSTVDVRTGRH 740
>At4g34630.1 68417.m04918 expressed protein
Length = 199
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 119 LIFNTTNTKHGRYRARKLMTGSGKEVYAYQTCFFLQPG 6
L+ + + K GR R RKL + +VYA + FL+PG
Sbjct: 148 LVPRSVSKKVGRQRMRKLGKRAIAKVYASKISPFLKPG 185
>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II
family protein low similarity to KbaY
(tagatose-1,6-bisphosphate aldolase) [Escherichia coli]
GI:8895753; contains Pfam profile PF01116:
Fructose-bisphosphate aldolase class-II
Length = 1373
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 452 CPLALQPGACELHQVHYVRDLHALSVPSDE 363
CP LQ G + VHYV D L VP+ E
Sbjct: 764 CPFFLQGGRYTIDDVHYVADSDRL-VPAGE 792
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,643,465
Number of Sequences: 28952
Number of extensions: 191472
Number of successful extensions: 465
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -