Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0497
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.62 
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.3  
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.7  
SB_30680| Best HMM Match : CENP-B_N (HMM E-Value=3.3)                  28   7.7  

>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
 Frame = +3

Query: 204  DPFNTPEAVVEVYISGISSLGSSADFKSKKYPLXVDEYEPDTFDVLKHRINQR--FTNG- 374
            DP +   +   VY+  + S  ++  FK + Y + + E+ P TF V+K     R   +NG 
Sbjct: 1251 DPVDPRWSAAVVYVEVLDSNDNAPVFKKQSYVVEMVEHSPTTFTVVKVEATDRDVGSNGR 1310

Query: 375  -GNKLVNINLSDSDQLLSYSNVL---GDLDIPKVKKQSL 479
                +V+ N+  +  + S S V+    D+D  K+++  L
Sbjct: 1311 ISYSIVSGNVDGAFVIDSSSGVIKPAQDIDREKIQRYLL 1349


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 81  PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPE 224
           PE  S SGS    + L    FS ++  S +E+  W  LL+TD +N P+
Sbjct: 405 PEMNSSSGSPSCLDVL--SCFSVNVASS-KESKFWCELLVTDKYNAPD 449


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 656 ELGPWKSRSACKELIRKL*KSMILSALIAPDSTFSVTAFKAASSLRNWKS 507
           +L P KSR++ KE+  +  +S  + +L  P  T +       SS  NWKS
Sbjct: 317 KLNPQKSRASIKEIEGEHARSNSVVSLDVPQETCNTALVTHGSSPLNWKS 366


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = -2

Query: 189 HSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYGGCLVRQM 52
           H+I S++Q  G  +  +  +K  +   W++  ++T ++GG L++ +
Sbjct: 374 HNIVSTIQCAGNRRSDMNRVKKVKGLDWSEGAISTAEWGGALLKDV 419


>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1273

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 279  FKSKKYPLXVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 440
            FKS K P  +DE +    D+LK   + +F    +  +N    DSD++ +   +L
Sbjct: 1017 FKSTKNPPLIDELKDFEDDMLKMIQSVKFIEASSPFLNKLKEDSDRIKNKPKLL 1070


>SB_30680| Best HMM Match : CENP-B_N (HMM E-Value=3.3)
          Length = 171

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 532 QVHLEIGSLLQLKILNAAKDCFLTFGISKSPNTF 431
           +V L +G L+++  L      ++ FGIS S N+F
Sbjct: 58  RVKLTLGKLIEISTLFETPPVYVIFGISASANSF 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,958
Number of Sequences: 59808
Number of extensions: 333046
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)