Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0497
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25540.1 68418.m03039 expressed protein                             29   2.1  
At3g11800.1 68416.m01446 expressed protein                             29   2.7  
At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containi...    28   4.8  
At5g11440.1 68418.m01336 hypothetical protein                          28   4.8  
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica...    28   4.8  
At3g57940.1 68416.m06458 expressed protein contains Pfam profile...    28   6.3  

>At5g25540.1 68418.m03039 expressed protein
          Length = 175

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 192 LLITDPFNTPEAVVEVYISGISSLGSSADFKSKK--YPLXVDEYEPDTFDV 338
           LL T P  + E++ +VY++    L ++ +  ++   Y    +EY PDT D+
Sbjct: 91  LLATYPGLSQESINDVYLANTCDLDATIEMLNQLEIYSTEAEEYLPDTLDI 141


>At3g11800.1 68416.m01446 expressed protein
          Length = 246

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
 Frame = -1

Query: 517 IGSLLQLKILNAAKDCFLTFGISKSPNTFEYDKS*SESLKLIFTS---LLPPLVKR*LIL 347
           IG      I  AAKD F +   SKS    +Y       L L   S   +  P V    +L
Sbjct: 39  IGDGFTFGIAFAAKDSFFSTNRSKS---VQYSPCDHRHLSLNGNSEVAVFRPKVDEITLL 95

Query: 346 CFNTSKVSGSYSSTXKGYFLDLKSAELPRLDMPLM 242
             NTS  S       KGY +    A+     +P+M
Sbjct: 96  TINTSSSSSFRPDASKGYMVAFAGAKYAARSLPIM 130


>At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 590

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 138 IFSASLGLSVEENSEWNGLLITDPFNTPEAVVE-VYISGISSL-GSSADFK 284
           IF   LGL ++ +  W GL+IT+  N  E+ +E   IS ++++ G  + F+
Sbjct: 12  IFINELGLLLQAHFTWIGLIITENCNGLESSIEREMISSLAAITGGPSTFR 62


>At5g11440.1 68418.m01336 hypothetical protein 
          Length = 155

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +3

Query: 87  SLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVEVYISGISSLG 266
           ++  S   K+ E   K+I    L L ++ + +   LL+T    + E++ +VY++    L 
Sbjct: 39  TVEVSMPKKSSEMAYKQIRDDDLDLEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLE 98

Query: 267 SSADFKSKK--YPLXVDEYEPDTFDV 338
           ++ +  ++   Y    +E  P+T D+
Sbjct: 99  ATIEMLNQLEIYSTESEENLPETLDI 124


>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
           to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
           GI:21427469; contains Pfam profile PF00022: Actin
          Length = 363

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 120 ESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEAVVE 236
           E LL+ +    LG   EE +E N +L TDP  TP+A+ E
Sbjct: 70  EDLLRYVVYTGLGW--EEGNEGN-ILFTDPLCTPKAIRE 105


>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1024

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 42  GINASGELSILHSPESLSFSGSSKTFESL-LKEIFSASLGLSVEENSEWNGLLITD 206
           G+  S  ++++HSP+SL F  +   F+ + L E      G  +E  S  NGLL  D
Sbjct: 440 GLEGSVLVNVIHSPDSLKFLRTGCLFKKIELTESIRYGSGDPIE--SWLNGLLCLD 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,303
Number of Sequences: 28952
Number of extensions: 253409
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)