Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0495
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 29 0.74
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 28 1.3
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 4.0
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 4.0
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 6.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 6.9
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 9.1
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 25 9.1
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 9.1
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.1
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 0.74
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 123 KNFLFNSQNLCYSLRASALGRCVDWLAS 40
K+FLF ++ SL S+LGRC LAS
Sbjct: 216 KSFLFKKSSIDNSLLHSSLGRCFSALAS 243
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 189 VRGVRKLRAEWTFWLEWEHSTDKNFLFNSQNLCY 88
+ G K +T WL + +DK FL N ++CY
Sbjct: 319 IPGTSKNWEAYTAWLTSSNDSDKKFLPNMVDVCY 352
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +3
Query: 183 LSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSKRS 344
L P T E K P +R E+S+ P + TPQ ++ KR+
Sbjct: 306 LLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAPSAPRLQKRA 359
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -3
Query: 232 GSSTLFSINGGVDGGERGPQTSSRVDILVRMGTFNR*KLSF*FTKLVLFAARFRSREVCR 53
G++ LF +N GG R S + + +G + F LFA+R+ S + +
Sbjct: 160 GTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF--DVYSLFASRYNSCKSAK 217
Query: 52 LASERQTN 29
+ ++ QTN
Sbjct: 218 IMTDPQTN 225
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 132 NVPILTRMSTLLEVCGPLSPPSTPPLME-NKVELPLKKIAAKRARESSSPPAGLVTPQPS 308
+ P+L S+LL+ PL+ S+ ME LKK +R SS TPQ S
Sbjct: 540 HTPVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRS 599
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 3 RGDNARSGLFVCRSLASLHTSLERKRAANNTSFVN*KESFYLLNVP 140
R D+ +SG V + + ++ +L + + NN+S +N S VP
Sbjct: 558 RSDDIKSGAPVLDTSSLVNPTLAKSASLNNSSLLNPSSSLLRREVP 603
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 371 HDAAPGAVLQALGHHAGPQGRHLQSGASAAPARARHEH 484
HD + + LG H G G H SG+ + + + H
Sbjct: 208 HDIPSQFIFRKLGLHHGKHGHHGHSGSLSLKSLVPNHH 245
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 9.1
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +3
Query: 24 GLFVCRSLASLHTSLERKRAANNTSFVN*KESFYLLNVPILTRMSTLLEVCGPLSPPSTP 203
G V L HT R N K SFY LNV ++ L + PS
Sbjct: 163 GPVVIEGLLRQHTDKPRFMMKNEPE----KNSFYFLNVREFAQLKGTLPILITELQPSLT 218
Query: 204 PLME 215
PL E
Sbjct: 219 PLQE 222
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 228 LPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 338
+P KK AAK+ARE+ + + P+D + D+ +
Sbjct: 1 MPRKKSAAKKAREALVQKKVINSNVPTDKKSIDQLQE 37
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 529 HKPNTLRAKRLLPFRSPFNLPVPHRRLKK 615
H N +K +PFR P + P+P + L +
Sbjct: 295 HSDNNSPSKPEIPFRHPTSKPLPPKPLSR 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,278
Number of Sequences: 5004
Number of extensions: 42735
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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