Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0495
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 36 0.017
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 36 0.017
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 36 0.017
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 36 0.017
At1g53800.1 68414.m06123 expressed protein 30 1.1
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 29 2.0
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 29 2.0
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 29 2.6
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.6
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.6
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.6
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.6
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.6
At3g08630.1 68416.m01002 expressed protein 28 4.5
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 4.5
At2g44060.2 68415.m05478 late embryogenesis abundant family prot... 28 6.0
At2g44060.1 68415.m05477 late embryogenesis abundant family prot... 28 6.0
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family... 28 6.0
At1g02405.1 68414.m00187 proline-rich family protein contains pr... 28 6.0
At3g13110.1 68416.m01641 serine O-acetyltransferase (SAT-1) iden... 27 7.9
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai... 27 7.9
At1g01030.1 68414.m00003 DNA-binding protein, putative similar t... 27 7.9
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 201 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 305
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 916 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 950
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 201 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 305
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 913 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 947
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 201 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 305
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 915 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 949
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 201 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 305
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 915 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 949
>At1g53800.1 68414.m06123 expressed protein
Length = 568
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +3
Query: 63 SLERKRAANNTSFVN*KESFYLLNVPILTRMSTLLEVCGPLSPPSTPPLMENK--VELPL 236
S+ KR A + ++ E LL + + + +LE+ SP + L+E+K +
Sbjct: 348 SIRAKRVAEESKKMDAVERARLL-ISEAEKAAKVLEIAALKSPVAQASLLESKKLIAEAT 406
Query: 237 KKIAAKRARESSSPPAG----LVTPQPSDSEGE 323
+ I + R+ +S G L++PQP+DSE E
Sbjct: 407 QLIKSLEMRQIASDEDGTYPFLLSPQPNDSESE 439
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 280 GGDDDSLARFAAIFLRGSSTLFSINGGVDGGERG 179
G +DD RF + G S F + GG GE G
Sbjct: 137 GPEDDENGRFPPVIAGGHSGEFPVGGGYGNGEHG 170
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +3
Query: 135 VPILTRMSTLLEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTP 299
VP+ L+ PL PP PPLM + P +R PP L P
Sbjct: 13 VPLPPPPPPLMRRRAPLPPPPPPPLMRRRAPPPPPPPLMRRRAPPPPPPPPLPRP 67
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +3
Query: 138 PILTRMSTL--LEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSD 311
P+L S+L P+ PPS PP M +P +A G V SD
Sbjct: 21 PVLQDASSLPGFSAIPPVVPPSFPPPMAPIPMMPHPPVARPPTFRPPVSQNGGVKTSDSD 80
Query: 312 SEGEDE 329
SE +DE
Sbjct: 81 SESDDE 86
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 326 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 499
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 500 I*NEPRTQLFTNQIHCEPN 556
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 326 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 499
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 500 I*NEPRTQLFTNQIHCEPN 556
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 326 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 499
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 500 I*NEPRTQLFTNQIHCEPN 556
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 326 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 499
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 500 I*NEPRTQLFTNQIHCEPN 556
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 326 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 499
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 500 I*NEPRTQLFTNQIHCEPN 556
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At3g08630.1 68416.m01002 expressed protein
Length = 339
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 502 NLSVLSMFMPCAGGGGRGS 446
N S ++ +PCAGGGG GS
Sbjct: 49 NFSSPNIMVPCAGGGGGGS 67
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 565 PFRSPFNLPVPHRRLKKLAYRHP 633
PFR+P P+PH LKKL + P
Sbjct: 174 PFRAPLR-PIPHEDLKKLGIQLP 195
>At2g44060.2 68415.m05478 late embryogenesis abundant family protein
/ LEA family protein similar to ethylene-responsive late
embryogenesis-like protein [Lycopersicon esculentum]
GI:1684830; contains Pfam profile PF03168: Late
embryogenesis abundant protein
Length = 325
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 126 LLNVPILTRMSTLLEVCGPLSPPSTPPLMENKVE 227
+++VP+L R++ LE CG + P P + K++
Sbjct: 167 IVDVPVLGRLTLPLEKCGEIPIPKKPDVDIEKIK 200
>At2g44060.1 68415.m05477 late embryogenesis abundant family protein
/ LEA family protein similar to ethylene-responsive late
embryogenesis-like protein [Lycopersicon esculentum]
GI:1684830; contains Pfam profile PF03168: Late
embryogenesis abundant protein
Length = 325
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 126 LLNVPILTRMSTLLEVCGPLSPPSTPPLMENKVE 227
+++VP+L R++ LE CG + P P + K++
Sbjct: 167 IVDVPVLGRLTLPLEKCGEIPIPKKPDVDIEKIK 200
>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 561
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 168 EVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGED 326
EV L PS PP + + P + AK+A+ ++ V+PQ E +D
Sbjct: 248 EVVEELKVPSAPPYIPSPPPSPPRPPPAKQAKRKTNRVYQDVSPQEEKKERDD 300
>At1g02405.1 68414.m00187 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 134
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 426 KDGTCSPEPLPPPP 467
K +C P PLPPPP
Sbjct: 73 KKSSCPPSPLPPPP 86
>At3g13110.1 68416.m01641 serine O-acetyltransferase (SAT-1)
identical to serine acetyltransferase (Sat-1) GI:1184048
[Arabidopsis thaliana]
Length = 391
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 402 PSVIMRAHKDGTCSPEPLPPPP 467
PS + K T SP P PPPP
Sbjct: 32 PSFVSSKFKHHTLSPPPSPPPP 53
>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
domain-containing protein contains Pfam profile PF01556:
DnaJ C terminal region
Length = 438
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 144 LTRMSTLLEVCGPLSPPSTPPLMENKVELPLKKI 245
++R ST V +PP PP +E K+E L+++
Sbjct: 237 ISRRSTTPIVFSQSTPPKKPPAVEKKLECTLEEL 270
>At1g01030.1 68414.m00003 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857, RAV2 GI:3868859; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 358
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 450 PLPPPPAHGMNMLKTLKFKMNRGHSYSQ 533
PLPPPP+ L+ M G+ Y+Q
Sbjct: 272 PLPPPPSTAGKRLRLFGVNMECGNDYNQ 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,537,917
Number of Sequences: 28952
Number of extensions: 256703
Number of successful extensions: 1196
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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