Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0494
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 289 2e-78
07_01_0756 + 5819367-5820038,5820847-5821005 285 2e-77
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 91 1e-18
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 2.7
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.5
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 6.2
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 28 6.2
11_01_0395 + 2999855-2999920,3000605-3002191 28 8.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 289 bits (708), Expect = 2e-78
Identities = 128/171 (74%), Positives = 156/171 (91%)
Frame = +3
Query: 186 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 365
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 366 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 545
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 546 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
IG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +T
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFT 207
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 285 bits (700), Expect = 2e-77
Identities = 128/171 (74%), Positives = 155/171 (90%)
Frame = +3
Query: 186 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 365
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 366 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 545
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 546 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
IGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +T
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFT 210
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 90.6 bits (215), Expect = 1e-18
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Frame = +3
Query: 405 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 581
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 582 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +T
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFT 95
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 333 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 512
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 513 LPV 521
+ V
Sbjct: 231 VTV 233
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 683 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 570
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 467 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 351
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 141 DRHGLYLHRVIRIRRENRHVHRLEQRPP 58
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 220 NSAVLFAK-EKSTNSRAFTCFLYQSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHV 396
N AV+ A K RAF +YQS +R + S +P L CL + ++ +AHV
Sbjct: 381 NDAVVTALCSKGEVVRAFQ--VYQSMRTRGI---STKPTTFHLLVECLSKKNNLEKAAHV 435
Query: 397 SRHLL 411
R +L
Sbjct: 436 VRDML 440
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 273 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 392
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,975,084
Number of Sequences: 37544
Number of extensions: 442117
Number of successful extensions: 1288
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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