Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0494
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 304 4e-83
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 298 3e-81
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 298 3e-81
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 298 3e-81
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 298 3e-81
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 296 1e-80
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 68 5e-12
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 32 0.32
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 3.0
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.9
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.2
At3g01450.1 68416.m00069 expressed protein 28 5.2
At3g63100.1 68416.m07087 glycine-rich protein 28 6.8
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 6.8
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.8
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 6.8
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 6.8
At4g03740.1 68417.m00513 hypothetical protein 27 9.0
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 9.0
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 304 bits (746), Expect = 4e-83
Identities = 134/169 (79%), Positives = 158/169 (93%)
Frame = +3
Query: 192 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 371
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 372 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 551
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 552 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 209
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 298 bits (731), Expect = 3e-81
Identities = 134/169 (79%), Positives = 154/169 (91%)
Frame = +3
Query: 192 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 371
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 372 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 551
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 552 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 298 bits (731), Expect = 3e-81
Identities = 134/169 (79%), Positives = 154/169 (91%)
Frame = +3
Query: 192 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 371
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 372 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 551
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 552 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 298 bits (731), Expect = 3e-81
Identities = 134/169 (79%), Positives = 154/169 (91%)
Frame = +3
Query: 192 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 371
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 372 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 551
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 552 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 298 bits (731), Expect = 3e-81
Identities = 134/169 (79%), Positives = 154/169 (91%)
Frame = +3
Query: 192 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 371
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 372 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 551
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 552 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 296 bits (726), Expect = 1e-80
Identities = 132/169 (78%), Positives = 154/169 (91%)
Frame = +3
Query: 192 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 371
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 372 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 551
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 552 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 698
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 218
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/118 (30%), Positives = 68/118 (57%)
Frame = +3
Query: 336 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 515
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 516 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQD 689
V + K T P + G G+ V L PA GTG+++ + +L+MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 32.3 bits (70), Expect = 0.32
Identities = 28/116 (24%), Positives = 52/116 (44%)
Frame = +3
Query: 342 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 521
V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421
Query: 522 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQD 689
R + HT+ + + L PAP TG+ + V K +L +AG ++
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKN 470
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 177 HDHGRDHDRVHEDRHGLYLH 118
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 544 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 365
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 364 CTGMILRTSSFR 329
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 402 AFVAIGDNNGHIGLGVKCSKE 464
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 565 TVCGFPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 386
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 385 CPARVCF 365
A CF
Sbjct: 218 AKASTCF 224
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 171 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 79
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 177 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 73
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 558 HTVPCKVTGKCGSVTVRL 611
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 498 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 677
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 678 GVQ 686
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 498 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 677
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 678 GVQ 686
GV+
Sbjct: 257 GVE 259
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 9.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 572 QGHRQVWFRNSPADSCPSWYWYC 640
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 34 LSEPIVQQWRTLLQP 78
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,081
Number of Sequences: 28952
Number of extensions: 330396
Number of successful extensions: 916
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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