Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0493
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    37   0.002
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    29   0.80 
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   5.6  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   7.4  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    25   9.8  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    25   9.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.8  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   9.8  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.8  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 353 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 460
           G++ YNF   +P   P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 353 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKF 472
           G+++YNF   +    P S + + G V Y ++  +DR   F
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTF 230


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 152 QKHIRSFHSLFVLHNMYSIDYPNRY 78
           +KH+++ HSL++    Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 414 PSKDEGRTGGNVQVKLYMCFPCGISISFP 328
           P  +E +  G   V+LY C  CG +  FP
Sbjct: 119 PPNEEEKWNGVRNVELYQCNVCGHNQRFP 147


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 104 TYYAGQTVNGRI-EYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGK 250
           T Y  +  +GR+  +V D P  V   H+K KG+       S  E   QG+
Sbjct: 199 TKYLKEKSDGRVASFVADPPGSVLYSHIKTKGKHPDNKGSSFTEGIGQGR 248


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 88  G*SMEYILCRTNSEWKDRI 144
           G S++YI C  N  WK++I
Sbjct: 115 GISLKYIPCAINCHWKNKI 133


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 443 KVTLDRPWKFDQETKMAFTVINALDLNLNPSY 538
           KV LDR WK        FT+ NA++   N S+
Sbjct: 612 KVRLDRSWKDALTINEFFTLKNAVEKQDNVSF 643


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 315 WEVIQGMKLKYHKGNTYII 371
           W+ + G K++ HKG+  ++
Sbjct: 120 WDAVSGQKIRKHKGHAGVV 138


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 521 SNPMHLLL*MPSWFPDQISMVCLML 447
           SN +   L +P+W+P + ++VCL+L
Sbjct: 71  SNLVIYALRVPNWWPCKTTVVCLIL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,185
Number of Sequences: 5004
Number of extensions: 67977
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)