Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0493
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788...    29   3.3  
01_01_0363 + 2850954-2853675,2853819-2854225                           29   4.4  
03_02_0127 + 5777564-5779879                                           28   5.8  
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708...    28   5.8  
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866...    28   7.7  

>05_05_0357 +
           24377989-24378039,24378601-24378632,24378724-24378818,
           24379165-24379237,24379804-24379867,24380465-24380732,
           24381132-24381202,24382028-24382084,24382302-24382403,
           24382544-24382588,24383616-24383693,24384350-24384400,
           24384475-24384556,24384883-24384956,24386093-24386144,
           24386230-24386288,24386380-24386456,24386692-24386778,
           24387011-24387101
          Length = 502

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 442 DSVSDITMFPFKR*RQDRWQCAGKIIYVFPLWYF 341
           DSV+ I+ +PF R    R +CA  +I +F LW++
Sbjct: 149 DSVAQISFYPFIRNDIIRTKCANVLISMF-LWFY 181


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 227 QEENAQGKTESTDTMHTGNEEYFQISYYLL--GSNTGNEIE-IPQGKHIYNFTCTL 385
           Q    +G+  S +      E+Y +ISYY L  GSN  +E   + +G++   + CTL
Sbjct: 685 QHRKLKGRQNSQEISPVIEEQYQRISYYALSRGSNEFSEANLLGKGRYGSVYKCTL 740


>03_02_0127 + 5777564-5779879
          Length = 771

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
 Frame = +2

Query: 152 DSPKKVRGIHVKIKGEAHTELYESKQEENA-QGKTESTDTMHTGNEEYFQISYYLLGSNT 328
           ++  ++    VK      ++  E  +EE A +G  ES + +  G E++ +     LGS +
Sbjct: 427 ENSSEIEADGVKANASMESQDAEGNEEEEAHEGLQESIEQLALG-EKHAKEPGSFLGSTS 485

Query: 329 GNEIEIPQGKHIY-NFTCTLP----PVLPSSFEGE 418
           GN +E  +   I+  +T   P    P+  +S +GE
Sbjct: 486 GNTVEDVKADEIFEGWTNNSPSHCQPISETSSDGE 520


>01_01_0898 +
           7078900-7079079,7080269-7080301,7080480-7080653,
           7080866-7083890,7084253-7084596
          Length = 1251

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 553 HSIRKDVLLFLLRITTFSSGCAGSCIWLLSR 645
           HS  +  L FLL + T + GC   CI+L+ R
Sbjct: 901 HSNSRHFLRFLLPVVTVAFGCMVICIFLMIR 931


>01_01_1096 -
           8659091-8659459,8660730-8661050,8661416-8661694,
           8661781-8661897,8662142-8662210,8663204-8663397,
           8663552-8663633
          Length = 476

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 335 EIEIPQGKHIYNFTCT--LPPVLPSSFEGEHGYVRYTVKVTLDRP 463
           E+  P+  ++ N  C    P   P ++  ++GY RY V    D P
Sbjct: 335 ELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,228
Number of Sequences: 37544
Number of extensions: 402655
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)