Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0493
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   2e-18
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            79   2e-15
SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   7e-10
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 32   0.37 
SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072)                31   0.64 
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.9  
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     29   4.5  

>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
 Frame = +2

Query: 164 KVRGIHVKIKGEAHT-----ELYES--KQEE-NAQGKTESTDTMHTGNEEYFQISYYLL- 316
           K R +HV+  GEA T     E Y +  K EE     KT     +H        +S Y+  
Sbjct: 52  KFRSVHVEFHGEARTNWDEIENYTTTHKNEEVYFNKKTSLLANVHLYRAVLIYLSGYVYD 111

Query: 317 --GSNTGNEIEIPQGKHIYNFTCTLPPV-LPSSFEGEHGYVRYTVKVTLDRPWKFDQETK 487
             G        +  G+H   F+  +PP  LPSSFE  HG+VRY ++  + RPW+FD+ TK
Sbjct: 112 FAGDKKRAVSVLSAGRHALEFSFKIPPFSLPSSFESTHGHVRYYLRARISRPWRFDEVTK 171

Query: 488 MAFTVINALDLNLNPSYKEPIHIQLEKTFCCFC-CASPPLAVDVQAPVSGYCPGQVIPL 661
           +   VI+ +D+N +P    P+  + +K   C C   + PL   V    S YCPG+ + L
Sbjct: 172 LQVHVIDLIDVN-SPRLLMPVFGEAQKALNCLCNGTAAPLHALVYTDRSAYCPGERLTL 229


>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
 Frame = +2

Query: 80  IYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGKTES 259
           I L  +   +Y G+ +NG +    +   K RGI ++  GEA+    ES    +  G    
Sbjct: 9   ITLTGEKRVFYPGEVLNGSVYLKLNKELKTRGIRLEFHGEANVRWSES----SGSGNNRR 64

Query: 260 TDTMHTGNEEYFQISYYLLGSNTG----NEIEIPQGKHIYNFTCTLPPV-LPSSFEGEHG 424
           T T +   E Y      L G + G    N +  P G++ Y F+  +P   LP+SFEG  G
Sbjct: 65  TRT-YRNQEVYINTVATLYGKDPGQGGDNPVH-PPGEYSYPFSFIIPQQNLPTSFEGNFG 122

Query: 425 YVRYTVKVTLDRPWKFDQETKMAFTVINALDLN 523
           +VRY +K  +DRPW+FD  TK AF++I  +D+N
Sbjct: 123 HVRYWLKAIIDRPWRFDVTTKAAFSMIEFVDIN 155


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 12/160 (7%)
 Frame = +2

Query: 80  IYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHT-----ELYES--KQEE- 235
           I L+ +   Y+ G+ V+G          K R +HV+  GEA T     E Y +  K EE 
Sbjct: 9   IVLNRKNRIYHPGEVVSGECVVYSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEV 68

Query: 236 NAQGKTESTDTMHTGNEEYFQISYYLL---GSNTGNEIEIPQGKHIYNFTCTLPPV-LPS 403
               KT     +H        +S Y+    G        +  G+H   F+  +PP  LPS
Sbjct: 69  YFNKKTSLLANVHLYRAVLIYLSGYVYDFAGDKKRAVSVLSAGRHALEFSFKIPPFSLPS 128

Query: 404 SFEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLN 523
           SFE  HG+VRY ++  + RPW+FD+ TK+   VI+ +D+N
Sbjct: 129 SFESTHGHVRYYLRARISRPWRFDEVTKLQVHVIDLIDVN 168


>SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
 Frame = +2

Query: 59  MGLKEANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEEN 238
           M ++   I LD +   Y  G  V+G + +      +VR I++   G    E+ E +    
Sbjct: 1   MTIENYAIELDRKDLVYTLGDYVSGEVRFTLTKEIRVREIYLHFFGRGKVEVMEGR---- 56

Query: 239 AQGKTESTDTMHTGNEEYFQISYYLLGSN--TGNEIEIPQGKHIYNFTCTLP--PVLPSS 406
                    T   G +EY++    LL      G    +  G++ Y F+  LP    LP +
Sbjct: 57  ---------TTFIGKQEYYRHVAELLDKEKVAGMNGILKPGEYKYPFSFELPFDGDLPGT 107

Query: 407 FEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLNLNPSYKEPIHIQLEKTFCCFC 586
           +E +HGY++Y+++  +DRP     +T    TVI+ ++  ++ +  EP   Q        C
Sbjct: 108 YEAKHGYIKYSLEALIDRPLMTPAKTGTLITVIDYVE--IDKTLLEPRQKQENWHVGYNC 165

Query: 587 CASPPLAVDVQAPVSGYCPG 646
           CAS  L V  +   +G+  G
Sbjct: 166 CASGSLTVTAKIDRAGFYIG 185


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
 Frame = +2

Query: 242 QGKTESTDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPPVLPSSFEGEH 421
           QG+    +T      +   IS+   G++TGN ++ P    + N + +  P   S +    
Sbjct: 152 QGENSLVNTFRNNLVDSSVISWQYFGTSTGNYLQFPASGKVCNGSSSFDPRFQSWYVEAV 211

Query: 422 GYVRYTVKVTLDRPWKFDQETKMAF---TVINALDLNLNPSYK 541
             +R  + V +DR        +MA      +  LD  L P+ K
Sbjct: 212 TRMRTNIVVVIDRSSSMSTAGRMALARQAAVTVLD-TLGPNDK 253


>SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072)
          Length = 327

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 583 LLRITTFSSGCAGSCIWLLSRSSNTFE 663
           ++ +T   +G AG CIWLL R+SN  +
Sbjct: 55  VIGLTLILTGIAGICIWLLDRNSNPID 81


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 345  YHKGNTYIILPAHCHLSCLH-LLKGNMVMSDT 437
            YHK     ++PA+ ++SC H L +G +V  DT
Sbjct: 1921 YHKAELARLVPAYAYISCKHSLQEGGIVEHDT 1952


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 140 EYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGKTESTDTMHTGNEEYFQISYYLLG 319
           E ++  PK++  +  KIK EA  E  E  +E   + + E   T +   ++    +   + 
Sbjct: 231 ESIWTEPKELTELKEKIKAEAEAENQEEGEESEEEEEEEKPATQNEAKQDTSATNTQAVP 290

Query: 320 SNTG-NEIEIP 349
           S +  N  EIP
Sbjct: 291 SASAVNTSEIP 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,041,519
Number of Sequences: 59808
Number of extensions: 480423
Number of successful extensions: 1284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)