Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0493
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    30   1.6  
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    28   4.9  
At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)...    28   6.4  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    28   6.4  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    27   8.5  
At3g42410.1 68416.m04385 replication protein-related weak simila...    27   8.5  

>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
 Frame = +2

Query: 344 IPQG-KHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRP--------WKFDQETKMAF 496
           + QG +H Y  TCT   +  + F+ E  Y+  TV   +  P        WKF    K   
Sbjct: 153 LKQGMRHSYVKTCTYIAIFDADFQPEPDYLERTVPFLIHNPELALVQARWKFVNAKKCLM 212

Query: 497 TVINALDLN 523
           T +  + LN
Sbjct: 213 TRMQEMSLN 221


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 453 NVTLTVYLT*PCSPSKDEGRTGGNVQVKLYMC 358
           NVT + Y+  PC+PS +  RT  N+ ++L +C
Sbjct: 88  NVTNSHYIAPPCNPSLNYLRTSNNL-IRLLIC 118


>At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)
           identical to heat shock protein 70 [Arabidopsis
           thaliana] GI:6746592
          Length = 718

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = +2

Query: 56  DMGLKEANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKG----EAHTELYES 223
           D  ++EA  +         A  T N     V+ + K+++ +  KI G    +   +L E 
Sbjct: 584 DTMVQEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGEKIPGPVKEKVEAKLQEL 643

Query: 224 KQEENAQGKT-ESTDTMHTGNEEYFQISYYLLGSNTGNEIEIPQG 355
           K E+ A G T E  DTM   N+E  QI   L         + P G
Sbjct: 644 K-EKIASGSTQEIKDTMAALNQEVMQIGQSLYNQPQPGGADSPPG 687


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 176 IHVKIKGEAHTELYESKQEENAQGKTESTDTMHTGNEEYFQISYYLLGSNTGNEIEIPQG 355
           +H ++ GEA TE+ ES ++ +  G+   + T    N +  + + +L     G  +E+P  
Sbjct: 403 LHPELLGEASTEINESLKQNDDIGEQGVSRT--PSNNKTKEHNEFL--DRGGESVEMPDE 458

Query: 356 KHIYNFTC 379
             I N TC
Sbjct: 459 LPIQNETC 466


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 547 WFLVRWIEIQIQCIYYCKCHLGFLIKF 467
           WF   W +   +C +YC+   GF ++F
Sbjct: 41  WFCC-WFQFWFRCRFYCRFDTGFDVRF 66


>At3g42410.1 68416.m04385 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 474

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 98  WNTYYAGQTVNGRIEYVFDS--PKKVR 172
           WN Y   + V+G+I+Y F    P+K R
Sbjct: 251 WNAYGDDEVVDGKIDYTFSDVHPRKTR 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,945
Number of Sequences: 28952
Number of extensions: 346245
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)