Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0492
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 367  LYNKKAVFLCFISLHWTN 314
            L+ K  VF C   LHW N
Sbjct: 1298 LWGKYEVFNCAPGLHWDN 1315



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 230  RGHSNYIPEGVLPNFLDLVVWG 295
            +G   Y+PE + P+    +V+G
Sbjct: 1412 KGLGKYLPEDIDPDLCTHIVYG 1433


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 366 CTTKKLSFSVLFPFIGQIW 310
           C + KL    L PF+ +IW
Sbjct: 525 CFSLKLKNKKLPPFLAEIW 543


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,481
Number of Sequences: 336
Number of extensions: 3335
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)